PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G119693_P01 | ||||||||
Common Name | LOC100272675, ZEAMMB73_484537 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 29476.8 Da PI: 5.3705 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ + ++G g+W+++++ g+ R++k+c++rw +yl GRMZM2G119693_P01 15 KGLWSPEEDERLYGHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 62 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 68 | 111 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E++l+v +++ lG++ W+ Ia++++ gRt++++k+ w++ GRMZM2G119693_P01 68 RGGFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNLWNS 111 7889******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 10 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.802 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.07E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-10 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.872 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-13 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.18E-10 | 71 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRLSCGGVQ PKLRKGLWSP EEDERLYGHI IRHGVGCWSS VPKLAGLQRC GKSCRLRWIN 60 YLRPDLKRGG FSQQEEDLIV ALHEILGNRW SQIASHLPGR TDNEIKNLWN SCLKKKLRQR 120 GIDPATHKPI AAEAGSAPLH RDDQSKPQQQ PAAAAVFDPF PVTDFGFDLG AAALYGDDVG 180 GDASSDAGFL ADYSSVLDVS ENLGYGESSS NSSGWNCAEM GNAVLDSEAL HWTSAAAAAA 240 TKPEPCSELE QQRSGGLSSE VFNIEFNLEY F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 9 | 117 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 118 | LKKKLRQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G119693 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G119693_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039155 | 0.0 | BT039155.1 Zea mays full-length cDNA clone ZM_BFb0377K22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140604.1 | 0.0 | MYB transcription factor | ||||
Swissprot | P20027 | 1e-102 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | B4FPW7 | 0.0 | B4FPW7_MAIZE; MYB transcription factor | ||||
STRING | GRMZM2G119693_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 6e-74 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G119693_P01 |
Entrez Gene | 100272675 |