PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G119640_P01
Common Namepco137268b, ZEAMMB73_070689
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 453aa    MW: 52225 Da    PI: 9.0016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G119640_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.8e-073356126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ykt+lC  ++r G C++ d+C+FaHg
  GRMZM2G119640_P01 33 YKTKLCALWQR-GGCSR-DTCSFAHG 56
                       9**********.*****.*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.3E-122762IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.44E-53161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.5823258IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-53356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MRDRSVEREF PSRERGDRPP PGVLGPPRRG PAYKTKLCAL WQRGGCSRDT CSFAHGHAEL  60
RRFPGSRTSF PPRAGRRDYR GGDFRDRFDR RRSPHRRHSP DGDSRGHRSL RDRRPNSQER  120
ESSYSRSPSR KSEMRHDKKP DDGETNSSRS LSVSDNNDDR KKETLLSGDD KEDHEIQLKQ  180
IRQDMELLRD DKSLLEIILD EKNAEVRKIS SRLNDLDLQL RKEKEECHRM TSKIKKFLKA  240
HARFLKAQEE LKRSQARFER LGDLLASDIL KRGANEEVSS INVDEDPNVP YERSPNAAIA  300
KKRSIPYSTS EEAKAVKKRR ERDSDTTRPD KYRFEGTIAG FEKLSKGTEP TKSLYLKKKL  360
WEDEKDKIGN FVSSANTDKV KESPVKHVLP STGMAAHALD DLFEAVELED RRDTSIENDA  420
DDETRSPVMP PQPPPVVNTY EQYEADDEEV DVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300319KKRSIPYSTSEEAKAVKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.822720.0cell culture| ear| embryo| endosperm| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G119640
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G119640_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0343970.0BT034397.1 Zea mays full-length cDNA clone ZM_BFc0165O08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352444.10.0uncharacterized protein LOC100192091
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLK7US340.0K7US34_MAIZE; Zinc finger CCCH domain-containing protein 40
STRINGGRMZM2G119640_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-20C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]