PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G119133_P01
Common NameLOC103627275, Zm.1269
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 758aa    MW: 79270.2 Da    PI: 10.0768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G119133_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding322.8e-10202245344
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                        +W++eEd  l+ +v+++G g+W+ I ++ +  ++Rt+ q+  rw
  GRMZM2G119133_P01 202 AWSKEEDADLAAGVQKYGEGNWEVILHKCNfdNTRTPDQLSQRW 245
                        8******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-11194246IPR009057Homeodomain-like
PROSITE profilePS512949.757195253IPR017930Myb domain
SuperFamilySSF466891.66E-11197247IPR009057Homeodomain-like
SMARTSM007176.0E-6199251IPR001005SANT/Myb domain
PfamPF002491.1E-8201245IPR001005SANT/Myb domain
CDDcd116601.44E-13206245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MAAAAPAAGK GKRKRHLSED DVCLLQRYNP GTILTALQEV AQHAEGRIID WRAVVAKSAT  60
GITSAREYQM LWRYLAYHHD LNESIEAGDL PLGDDSDLEL ELEPNPSETK EALSEASALA  120
KALISRSSRE QASGHRINLD VPALNTQNEK IVRVPSKQLA QSHRVTNVTC PVSNPKQLSH  180
IVPSPTHLDP NGASKKRKKA KAWSKEEDAD LAAGVQKYGE GNWEVILHKC NFDNTRTPDQ  240
LSQRWALKRP GGSTKPASTK HASVGSEERS ATIKALHLAV GPMPVSSALR SGREQSIQHK  300
STAFAPKMPQ VRSAVTPSLA PALALPVQPL RVAAEVQSPL RHGQQAPGQG APPKLSNASN  360
NTRKKQAALP NSTFSPSSIQ AAAIAAGGRL ATASTAANLL KAAQSKNAVH IRSLGATSLK  420
SSASFDHGTQ SGGSQHLESL NASAVNGVSG VSAVNQSGPP AGAETKKALG TTLAPVPCDS  480
EENEDGSEFC AITLDDLFPE DAKQPETVDT KAKQPETTGP KAKQPENADP KAMHQETMDP  540
KSKQPDTLKV GILDPKDKDM LEFDQYVASQ GAHLNTDDLN KSKCTNSASQ AQGLVGSQKN  600
PLKLTPVDGK ANPVTAAGRG KPVAAGVAST GKKATIPISH LAAGTPRGIV DTVNANAPIR  660
RTLTRRAAAL VPAGCQAPPP KHAIDAKGCQ MTNSIATFVS SGVPASSQAS TPAKDANKAS  720
PPSSSCQPKP DSVAVNGAIR AVKSVAKKGN LPAAAARQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.978050.0endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G119133
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G119133_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9709500.0EU970950.1 Zea mays clone 354478 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645786.10.0uncharacterized protein LOC103627275
TrEMBLA0A1D6HA980.0A0A1D6HA98_MAIZE; Homeodomain-like superfamily protein
STRINGGRMZM2G119133_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.13e-19MYB_related family protein