PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G118884_P01
Common NameLOC103626448, Zm.136812
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family DBB
Protein Properties Length: 308aa    MW: 31873.5 Da    PI: 4.5415
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G118884_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06246341
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       ++ C+ +   ++   C  ++  lC  C    H+       H+++p
  GRMZM2G118884_P01  2 QMLCDVCAAAPAAVICCADEAALCSACDRRVHRAnklahkHRRIP 46
                       589*****************************7799996666665 PP
2zf-B_box25.42.9e-0860101338
           zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                        ++ C+ ++e +   fC +++  lC+dC + +H+       Ht
  GRMZM2G118884_P01  60 KPLCDVCKERRGLVFCVEDRAILCPDCDDPIHSAndltakHT 101
                        689*****************************6577777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
SMARTSM003361.4E-7147IPR000315B-box-type zinc finger
CDDcd000213.10E-5447No hitNo description
SMARTSM003361.3E-1458105IPR000315B-box-type zinc finger
PROSITE profilePS501199.14358105IPR000315B-box-type zinc finger
PfamPF006436.6E-660102IPR000315B-box-type zinc finger
CDDcd000215.10E-761105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MQMLCDVCAA APAAVICCAD EAALCSACDR RVHRANKLAH KHRRIPLAQP SGDESDADAK  60
PLCDVCKERR GLVFCVEDRA ILCPDCDDPI HSANDLTAKH TRFLLVGAKL SAALVDAQAP  120
HSPDDDDNDC GRGNGAAAEP DAVPAVCAQG SCAAKASSLE SGGGGGGGSG SGSSISEYLT  180
NICPGWRVDD LLFDDSAFSA ASKADSCDDG HEQVPSLDAD LFDVVAGAGW PGKRGSAWSG  240
VGALGFDKVP ASVVVVPTAA KQQQGCVRER TWDSDSDSDV FAVPELPQPP QAKKARPAPA  300
PAPTFWCF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1368120.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G118884
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G118884_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0384501e-122BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBankEU9680731e-122EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBankHQ8587761e-122HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020393259.10.0B-box zinc finger protein 20
TrEMBLA0A3L6EVT60.0A0A3L6EVT6_MAIZE; B-box zinc finger protein 20
STRINGGRMZM2G118884_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Representative plantOGRP1271444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.16e-30DBB family protein