PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G118870_P01 | ||||||||
Common Name | LOC100280215, ZEAMMB73_587171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 322aa MW: 35192.4 Da PI: 5.9781 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 21.1 | 6.7e-07 | 187 | 236 | 14 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 14 ReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R + +rsR RK+++i+eLe+ v++L++ +L+ ++++l + +l +e+ GRMZM2G118870_P01 187 RRSGQRSRVRKLQYIAELERTVESLQNIGADLAVRMSSLFHLHNALSMEN 236 67889*********************999999988888877777776666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd14703 | 4.19E-16 | 186 | 230 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.9E-5 | 187 | 248 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSRSPHLPPR CPPLGPQITR RDDGMFTQSC RFPSGDTFIG EPPCWLDDLL EDSGKAPKLP 60 PLRRACSDSD AILDALSTFQ SPIYPIEECD LNSGGEAEDL LGGVEGDESG SVVEASCFYG 120 PNSPRQKSRL TTSESSMVNA VLENVPGNPL QYLTIDACSD VNGNVANVTA DACDAFGHPD 180 QDKSFKRRSG QRSRVRKLQY IAELERTVES LQNIGADLAV RMSSLFHLHN ALSMENKQLR 240 IHISSLQQAK LIKDGQTQAL KNEAERLKQM SARHRRSRSV TSCYDLSSFG ADATAVNWQM 300 PDMARLSLNG SSSVSPRSGY GI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 192 | RRSGQRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.6004 | 0.0 | ear| endosperm| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G118870 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G118870_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068415 | 0.0 | BT068415.1 Zea mays full-length cDNA clone ZM_BFb0176P14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146618.2 | 0.0 | putative bZIP transcription factor superfamily protein isoform 1 | ||||
Refseq | XP_008677142.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
Refseq | XP_008677143.1 | 0.0 | putative bZIP transcription factor superfamily protein isoform X1 | ||||
TrEMBL | C0PJE6 | 0.0 | C0PJE6_MAIZE; BZIP protein | ||||
STRING | GRMZM2G118870_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8137 | 26 | 31 | Representative plant | OGRP9737 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 9e-19 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G118870_P01 |
Entrez Gene | 100280215 |