PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G118063_P02 | ||||||||
Common Name | HDZIV10_OCL10, umc1381, ZEAMMB73_701146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 802aa MW: 86055.9 Da PI: 5.4285 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 108 | 164 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q+ee+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k+ GRMZM2G118063_P02 108 KKRYHRHTQHQIEEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 164 688999************************************************995 PP | |||||||
2 | START | 186.4 | 1.5e-58 | 307 | 527 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakae 80 ela +a++el+++a +++p+W + ++++++e+ ++f+ + + + ea+r+ +vv+m+ lve+l+d ++ ++ + +a+ GRMZM2G118063_P02 307 ELAVAAMDELLRMARVDAPLWNGGVagvpQQLDEEEYGRTFPGGLGprqygLRPEASRDDAVVIMTRDSLVEILMDANRfaaVFSSIVSRAS 398 57899****************99999999************6665599999999************************88888888888*** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 t+ev+s+g galq+m++e+q++splvp R+++f+Ry++ ++g+w++vdvS+ds ++ p +++++pSg+l+++++ng+skvt GRMZM2G118063_P02 399 THEVLSTGvagsynGALQVMSMEFQVPSPLVPtRESYFARYCKNNPDGTWAVVDVSLDSLRPSPA----LKCRRRPSGCLVQEMPNGYSKVT 486 **************************************************************995....9999******************* PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 wvehv++++r++h+l+r+lv+sgl +ga +wv tl+rqce+ GRMZM2G118063_P02 487 WVEHVEVDDRSVHNLYRPLVNSGLGFGATRWVGTLDRQCER 527 ***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 87 | 149 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.13E-19 | 92 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 105 | 165 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-20 | 106 | 169 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.6E-18 | 108 | 163 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.85E-19 | 108 | 166 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 140 | 163 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.10.10.60 | 7.4E-4 | 150 | 192 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 0.00848 | 161 | 185 | No hit | No description |
PROSITE profile | PS50848 | 37.615 | 298 | 530 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.3E-30 | 300 | 529 | No hit | No description |
CDD | cd08875 | 1.55E-115 | 302 | 526 | No hit | No description |
SMART | SM00234 | 1.9E-50 | 307 | 527 | IPR002913 | START domain |
Pfam | PF01852 | 8.7E-49 | 308 | 527 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-4 | 401 | 522 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.39E-24 | 549 | 791 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 802 aa Download sequence Send to blast |
MTPARRMPAM IGRNNGVAFG SSSALSLSQV IIPADFLDSH HLQQAFEQQL FEQIPAAAVD 60 SSDNIIHGRS DALVDEFESK SCSENPDGTA SGDDGQGDED PNQRPNKKKR YHRHTQHQIE 120 EMEAFFKECP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKNQHERQE NAQLRAENDK 180 LRAENMRYKD ALGTASCPSC GGPAALGEMS FDEHHLRLEN ARLRDEIDRI SGIAAKHVGK 240 PMVSFPVLSS PLAARSPFDL AGAYGVQPPG GGGGLGAADH LFGGAAGDLL RSVSAGQLSA 300 DKSMIVELAV AAMDELLRMA RVDAPLWNGG VAGVPQQLDE EEYGRTFPGG LGPRQYGLRP 360 EASRDDAVVI MTRDSLVEIL MDANRFAAVF SSIVSRASTH EVLSTGVAGS YNGALQVMSM 420 EFQVPSPLVP TRESYFARYC KNNPDGTWAV VDVSLDSLRP SPALKCRRRP SGCLVQEMPN 480 GYSKVTWVEH VEVDDRSVHN LYRPLVNSGL GFGATRWVGT LDRQCERLAS AMASNIPNGD 540 LGVITSIEGR KSMLKLAERM VASFCGGVTA SAAHQWTTLS GSGAEDVRVM TRKSVDDPGR 600 PPGIVLNAAT SFWLPVPPKR VFDFLRDETS RSEWDILSNG GAVQEMAHIA NGRDHGNCVS 660 LLRVNSANSN QSNMLILQES CTDASGSYVV YAPVDVVAMN VVLNGGDPDY VALLPSGFAI 720 LPDGPPAPGM APHHGGEGAA GGGLEELEAA GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN 780 SLIACTVERI KAAVCGAEGN PQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.28644 | 0.0 | ear| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G118063 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically expressed in the L1-layer of the meristem and protoderm (epidermis) of leaf primordia. During leaf development, expressed in protoderm from plastochron 1 (P1) to P4 and down-regulated at P5 to then disappear. Expressed in the epidermis of primary rachis branch, and in the protoderm of secondary rachis branch primordia. Expressed similarly in L1-layer or protoderm in young and developed floral shoots. During embryogenesis, expressed in the outermost (epidermal) cells 2 days after pollination (DAP) and later at 4 DAP in protodermal cells without any organ differentiation. In nearly mature embryo, strongly expressed in protoderm in the shoot apical meristem (SAM) and lateral organ primordia. {ECO:0000269|PubMed:11846882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G118063_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053917 | 0.0 | BT053917.1 Zea mays full-length cDNA clone ZM_BFc0045E07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001145750.1 | 0.0 | uncharacterized LOC100279257 | ||||
Swissprot | Q6ZAR0 | 0.0 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
TrEMBL | B7ZX75 | 0.0 | B7ZX75_MAIZE; Homeodomain leucine zipper family IV protein | ||||
STRING | GRMZM2G118063_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G118063_P02 |
Entrez Gene | 100279257 |
Publications ? help Back to Top | |||
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