PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G117851_P01 | ||||||||
Common Name | bzip1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 358aa MW: 38189.6 Da PI: 9.3179 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 72 | 8.7e-23 | 213 | 275 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +ke+krerrkq+NRe+ArrsR+RK+ae+eeL+++v+ L+aeN++L++e+++l++ ++kl++e+ GRMZM2G117851_P01 213 DKESKRERRKQSNRESARRSRLRKQAETEELARRVELLTAENTSLRSEISRLTESSQKLRMEN 275 689*********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 6.3E-26 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 2.9E-17 | 211 | 273 | No hit | No description |
SMART | SM00338 | 1.2E-21 | 213 | 277 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.0E-21 | 214 | 275 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.656 | 215 | 278 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.0E-11 | 217 | 272 | No hit | No description |
CDD | cd14702 | 8.68E-22 | 218 | 266 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 220 | 235 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 358 aa Download sequence Send to blast |
MGHDEAVVTQ NSVKAPSPPK DQPAIYPCFD WSTVQAYYGP GVLPPAFFNP GIAPGHAPPP 60 YVWGPQTMPP AAFGKSYAAI YPHAGGFLHP LMPLVVNPLS AEPAKSGNSK DNSLNKKLKE 120 IDGSAVSSGN SEKTSGDHSL EGSSDGNNPK VSGTPKKRSL DDRTTSETCG ESGRLPALSS 180 VRIPDTMMKP CVSTGSDFKV SGATSTEWPA KDDKESKRER RKQSNRESAR RSRLRKQAET 240 EELARRVELL TAENTSLRSE ISRLTESSQK LRMENSALME KLADGTSDQA QEASAGHQTT 300 PTAPSSARVV KNFLWMMDGE GASRGGSGSS SRRRDHGAPM LRQLLSSGPL AADAVAAS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 229 | 235 | RRSRLRK |
2 | 229 | 236 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.20291 | 0.0 | leaf| pollen| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G117851 |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G117851_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT063685 | 0.0 | BT063685.1 Zea mays full-length cDNA clone ZM_BFc0095E05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105272.2 | 0.0 | bZIP transcription factor 1 | ||||
TrEMBL | C0P5W6 | 0.0 | C0P5W6_MAIZE; Uncharacterized protein | ||||
TrEMBL | K4JFJ3 | 0.0 | K4JFJ3_MAIZE; BZIP-type transcription factor (Fragment) | ||||
STRING | GRMZM2G117851_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2776 | 38 | 88 | Representative plant | OGRP4346 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46270.1 | 2e-40 | G-box binding factor 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G117851_P01 |
Entrez Gene | 542188 |
Publications ? help Back to Top | |||
---|---|---|---|
|