PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G117244_P01
Common NameLOC100382127
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 369aa    MW: 39807.4 Da    PI: 7.5366
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G117244_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W +eEd  l+ ++ ++G g +W   ++++g++R++k+c++rw++yl
  GRMZM2G117244_P01 14 KGPWAPEEDAVLKAYIDEHGAGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62
                       79*********************************************97 PP
2Myb_DNA-binding46.49.3e-1569111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g +T+eEd l+ ++    Gg+ W+tIa+ ++ gRt++++k++w++
  GRMZM2G117244_P01  69 GGFTEEEDRLICNLYISIGGR-WATIAAQLP-GRTDNDVKNHWNT 111
                        569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.935962IPR017930Myb domain
SuperFamilySSF466897.59E-2612109IPR009057Homeodomain-like
SMARTSM007176.4E-101364IPR001005SANT/Myb domain
PfamPF002494.8E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-231569IPR009057Homeodomain-like
CDDcd001672.44E-71662No hitNo description
PROSITE profilePS5129423.46663117IPR017930Myb domain
SMARTSM007178.1E-1367115IPR001005SANT/Myb domain
PfamPF002495.1E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2270117IPR009057Homeodomain-like
CDDcd001676.67E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAPE EDAVLKAYID EHGAGGNWIQ LPHKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FTEEEDRLIC NLYISIGGRW ATIAAQLPGR TDNDVKNHWN TKLKRRLLGG  120
GRRPRAEARL QLLTTSPFWQ HRDSLASSAA ALERMQVSTR LHRRHQPRLD DPAAAAAAFT  180
LYNNYGSLGA PLWPSLLSPS SSPSPAASET SEILPRQPPP GTGATSTGYV YSAGGLWTHM  240
PGSFGYAGAR VVRQENMDGT CTPPLSTSTT GETMTTAVGV ESSSSTPTAS SASATFGGSM  300
DDEIDMLLRQ IQCFGENGSH IGDDGIDHCF RATDHHETAN GSVGSWGSCC STPGVDSVFH  360
DYVQGHNQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25141177108B-MYB
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G117244
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In roots, expressed in endodermal cells from the late elongation zones to the differentiation zone and, to a lower extent, in endodermal cells of the meristematic zone. {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
UniprotTISSUE SPECIFICITY: Expressed in leaves, roots (endodermis-specific) and seedlings. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322, ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G117244_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632600.0BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168359.10.0uncharacterized LOC100382127
SwissprotQ9FKL27e-72MYB36_ARATH; Transcription factor MYB36
TrEMBLC0P4P10.0C0P4P1_MAIZE; Transcription factor MYB36
STRINGGRMZM2G117244_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-66myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]