PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G117193_P02 | ||||||||
Common Name | GLK6, Zm.19190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | G2-like | ||||||||
Protein Properties | Length: 294aa MW: 31203.9 Da PI: 4.9999 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.4 | 4.4e-30 | 18 | 71 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +rlrWt +LH rFv av+qLGG++kAtPk+++++m v gLtl+h+kSHLQ+YRl GRMZM2G117193_P02 18 ARLRWTRQLHGRFVLAVAQLGGADKATPKSVMRAMAVSGLTLYHLKSHLQRYRL 71 7****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.0E-31 | 15 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-14 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.0E-21 | 18 | 72 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 1.4E-10 | 121 | 164 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSSLGGQQQH GRGDEARARL RWTRQLHGRF VLAVAQLGGA DKATPKSVMR AMAVSGLTLY 60 HLKSHLQRYR LAVSQGTASP VGEGDNGGGA NERSSSSESQ LDEYDDGSVA DLHGDSSGSM 120 AARVQREAKR KRHEQMQIEV QRHLQLRIEA QGRYMQSVLR RAQEALADHI LGSPATGAEA 180 ELSELASAVE TGTGCLSSTS CCSTSPSPMR HRSADSCVTS SSSSSSSEAE SQAPAGANTC 240 AGTRDCSVER PVQGEESTFL QRHEDEDEAE EADVGAAAAA EDEDGTSSEI DLNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-17 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-17 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-17 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-17 | 17 | 72 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G117193 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G117193_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968975 | 0.0 | EU968975.1 Zea mays clone 325336 MYR1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340516.1 | 0.0 | uncharacterized protein LOC100274073 | ||||
TrEMBL | B6TVG0 | 0.0 | B6TVG0_MAIZE; G2-like transcription factor | ||||
STRING | GRMZM2G117193_P03 | 1e-164 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 9e-41 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G117193_P02 |
Publications ? help Back to Top | |||
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