PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G117108_P02
Common NameZm.36600
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 883aa    MW: 101136 Da    PI: 6.4844
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G117108_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.11.4e-13123204188
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        k+Y++YA++ GFs  + ks++  ++g + +    Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +leHnH+
  GRMZM2G117108_P02 123 KYYKQYAEDSGFSAIILKSSYL-KSGVCRRLVIGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLEHNHP 204
                        69*************9999998.7888***************99998.....999****************99999***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-11123205IPR004330FAR1 DNA binding domain
PfamPF105511.0E-24309402IPR018289MULE transposase domain
PROSITE profilePS509669.78596634IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-5607630IPR007527Zinc finger, SWIM-type
SMARTSM005750.0047609636IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MSHGVPAPML EELAREATLA DVSILVDGND AELHVHGNGA EVHDNGTELH GNGAVLKRVE  60
MPQVREVYDL GAISAKEVPL HEGKEVILVD DNDSGQEDDA EGKVDENTPR VGLRFKTYDD  120
ALKYYKQYAE DSGFSAIILK SSYLKSGVCR RLVIGCSRAG RGRANACYLS RESTKINCPA  180
RISLKLRQDR WLHIDDAKLE HNHPYNQSTT SLINCYKKLT DAKNGVSASR LKGRRNIPAE  240
KEQGNFTEIG RLKFGEGDDE YIQKFFGNMQ NKNPYFFYLV DLDNQGRLRN LFWSDARSRA  300
ANDYFGHDVV YFDTSYLTEK YDLPLVFFTG MNNHGQPVLF GTALLSDLSV DSYAWLLRAF  360
LSCMKGLCPK AIITEHYNAI MDAVQEVLPE VRHRLCLYRI MKDVAENLKE HAEFKTINKA  420
LKKVTYGSLK IPEFEMEWKK IIEEHGLGGN ECLSSLYEHR QLWAPAYLRD KFWAGMSISQ  480
RGESISSYYD GFVYPKTSLK QFFSKYEMIL ENKYKKEWQA DEESSHRSPL TVTKFYMEEQ  540
LAKAYTINMF RKFQDELKAT MYCDGMPIKV DGRLVTFEVK ECSYMEDGKD TESRTYEVYF  600
CKEEPKVEIE CECGFVQFTG ILCRHALSVL KLQEIFEIPK DYVLDRWRRD YKKLYYNAKK  660
PNEMPLSDIV ERSDYLFTQC SQLLNLGFVS ESRYLVALKL LREMERSLLD DGLPARDRQP  720
MLLSFEADAP ENGQGLFSPQ FSEGVKNSQS AHAKRRGRPL KKVTESTDDT VTQPNKEQDF  780
LRSSFVTENT NMIQGPSSAS HLEGPHMGVQ GGIDLMDGIP NLSFGNHFGM DINHQHQVPN  840
HQRMQQNNFI QVQAEPHGFG NQWVYHPMLQ DNPVLRTPAR RAG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.366000.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G117108
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G117108_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645906.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1D6HCQ90.0A0A1D6HCQ9_MAIZE; Protein FAR1-RELATED SEQUENCE 6
STRINGGRMZM2G117108_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1458844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-113FAR1-related sequence 6