PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G117108_P01
Common NameZm.36600
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 879aa    MW: 100617 Da    PI: 6.4842
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G117108_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.11.4e-13118199188
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                        k+Y++YA++ GFs  + ks++  ++g + +    Cs+ g+ + +         +r++t+++C a++ +k+++d   ++++ +leHnH+
  GRMZM2G117108_P01 118 KYYKQYAEDSGFSAIILKSSYL-KSGVCRRLVIGCSRAGRGRANACY-----LSRESTKINCPARISLKLRQDRWLHIDDAKLEHNHP 199
                        69*************9999998.7888***************99998.....999****************99999***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-11118200IPR004330FAR1 DNA binding domain
PfamPF105511.0E-24304397IPR018289MULE transposase domain
PROSITE profilePS509669.78591629IPR007527Zinc finger, SWIM-type
PfamPF044342.6E-5602625IPR007527Zinc finger, SWIM-type
SMARTSM005750.0047604631IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 879 aa     Download sequence    Send to blast
MSHGVPAPML EELAREATLA DVSILVDGND AELHVHGNGA EVHDNGTELH GNGAVLKRVE  60
MPQDLGAISA KEVPLHEGKE VILVDDNDSG QEDDAEGKVD ENTPRVGLRF KTYDDALKYY  120
KQYAEDSGFS AIILKSSYLK SGVCRRLVIG CSRAGRGRAN ACYLSRESTK INCPARISLK  180
LRQDRWLHID DAKLEHNHPY NQSTTSLINC YKKLTDAKNG VSASRLKGRR NIPAEKEQGN  240
FTEIGRLKFG EGDDEYIQKF FGNMQNKNPY FFYLVDLDNQ GRLRNLFWSD ARSRAANDYF  300
GHDVVYFDTS YLTEKYDLPL VFFTGMNNHG QPVLFGTALL SDLSVDSYAW LLRAFLSCMK  360
GLCPKAIITE HYNAIMDAVQ EVLPEVRHRL CLYRIMKDVA ENLKEHAEFK TINKALKKVT  420
YGSLKIPEFE MEWKKIIEEH GLGGNECLSS LYEHRQLWAP AYLRDKFWAG MSISQRGESI  480
SSYYDGFVYP KTSLKQFFSK YEMILENKYK KEWQADEESS HRSPLTVTKF YMEEQLAKAY  540
TINMFRKFQD ELKATMYCDG MPIKVDGRLV TFEVKECSYM EDGKDTESRT YEVYFCKEEP  600
KVEIECECGF VQFTGILCRH ALSVLKLQEI FEIPKDYVLD RWRRDYKKLY YNAKKPNEMP  660
LSDIVERSDY LFTQCSQLLN LGFVSESRYL VALKLLREME RSLLDDGLPA RDRQPMLLSF  720
EADAPENGQG LFSPQFSEGV KNSQSAHAKR RGRPLKKVTE STDDTVTQPN KEQQDFLRSS  780
FVTENTNMIQ GPSSASHLEG PHMGVQGGID LMDGIPNLSF GNHFGMDINH QHQVPNHQRM  840
QQNNFIQVQA EPHGFGNQWV YHPMLQDNPV LRTPARRAG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.366000.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G117108
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G117108_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645906.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A1D6HCQ90.0A0A1D6HCQ9_MAIZE; Protein FAR1-RELATED SEQUENCE 6
STRINGGRMZM2G117108_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-113FAR1-related sequence 6