PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G116646_P05
Common Namegpm293, YAB5
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family YABBY
Protein Properties Length: 152aa    MW: 16923.2 Da    PI: 7.1837
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G116646_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY98.21.9e-3071165110
              YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh.ldeslkee.lleelkveeenlksnvekees.as 93 
                          +++vCyv+C+fCnt+lavsvP +s++++vtvrCGhC++llsvnl+  ++ l+ ++h l+e++k + +  +l+++++ +   ++  +s +s
  GRMZM2G116646_P05   7 APADHVCYVHCSFCNTVLAVSVPGNSMLNIVTVRCGHCANLLSVNLRALMHSLPEQDHqLQENIKVHgINGTLHDDHQYCGHLDQLGSSsSS 98 
                        5789**************************************************99974667776666555666666655554443333033 PP

              YABBY  94 tsvssekl.senedeevp 110
                        + ++   + s ++++++ 
  GRMZM2G116646_P05  99 RFRRLPVMcSPQNEQHLL 116
                        333333333434444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-298117IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSSAQIAPAD HVCYVHCSFC NTVLAVSVPG NSMLNIVTVR CGHCANLLSV NLRALMHSLP  60
EQDHQLQENI KVHGINGTLH DDHQYCGHLD QLGSSSSSRF RRLPVMCSPQ NEQHLLQEQT  120
LNNNARRKAP FHVHADDHAY ACLNLHNLLF LA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.24420.0aerial organ| embryo| endosperm| meristem| ovary| pedicel| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G116646
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G116646_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0358120.0BT035812.1 Zea mays full-length cDNA clone ZM_BFb0084F06 mRNA, complete cds.
GenBankBT0416680.0BT041668.1 Zea mays full-length cDNA clone ZM_BFb0028G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353892.11e-88uncharacterized protein LOC100193531
SwissprotQ10FZ79e-36YAB2_ORYSJ; Protein YABBY 2
TrEMBLB4FFC41e-107B4FFC4_MAIZE; C2C2-YABBY transcription factor
STRINGGRMZM2G116646_P025e-88(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.14e-18YABBY family protein