PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G116557_P03 | ||||||||
Common Name | ARF25, ZEAMMB73_313624, Zm.87072 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ARF | ||||||||
Protein Properties | Length: 806aa MW: 90231.1 Da PI: 6.4694 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.3e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++ +++a+e+ + ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F GRMZM2G116557_P03 127 FCKTLTASDTSTHGGFSVLRRHADEClpaldmsQ--SPPTQELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL-- 214 99*****************************644..444559************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + +++el+v+v+r+ GRMZM2G116557_P03 215 RGENGELRVGVRRA 228 449999*****996 PP | |||||||
2 | Auxin_resp | 112.5 | 4e-37 | 253 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp Wp+S Wr Lk GRMZM2G116557_P03 253 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPDSSWRYLK 334 89*********************************************************************.9*******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-40 | 118 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.31E-39 | 121 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.06E-20 | 125 | 227 | No hit | No description |
Pfam | PF02362 | 2.4E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.956 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-33 | 253 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.8E-5 | 673 | 728 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.7E-12 | 686 | 769 | No hit | No description |
PROSITE profile | PS51745 | 23.618 | 692 | 785 | IPR000270 | PB1 domain |
Pfam | PF02309 | 5.5E-8 | 736 | 777 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 806 aa Download sequence Send to blast |
MPPAAMALPS QAPSNSGDPL YPELWRACAG PLVTVPRVGD LVFYFPQGHI EQVEASMNQV 60 AGNPMRLYDL PSKLLCRVLN VELKAETDTD EVYAQIMLMP EPEQNDVAAE KTSSGSAAPP 120 RPAVRSFCKT LTASDTSTHG GFSVLRRHAD ECLPALDMSQ SPPTQELVAK DLHGMEWRFR 180 HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QLSNVPSSVI 240 SSQSMHLGVL ATAWHAINTK SMFTVYYKPR TSPSEFIIPY DQYMESVKNN YSIGMRFRMR 300 FEGEEAPEQR FTGTIVGCEN LDPLWPDSSW RYLKVRWDEP STIPRPDKVS PWKIEPASSP 360 PVNPLPLSRG KRPRQNAPPP SPESSVLTKE GATKIDTDSA QTPHQNSVLQ SQEQMSFRNN 420 LTESTDSDST VQKQMMWSPS PNGKVHTNFQ PRPAMDNWMP LGRRETDFKD TRSAFKDART 480 ASQSFGDTQG FFMQAYDDSR HRLSFNNQFQ DQGSAHRFAD PYFYMPQQPS LTVESGTRTQ 540 TANNDLRFWS ERNSMYGNPS DQQQGFSFGQ NTSSWLNQPL PQVEQSRVVR PHATVAPFDL 600 EKTREGSGFK IFGFQVDTTN PSPVQLSSPL SAIREHVVQT RPSAPVNELQ PVQIECLPEV 660 SVSTAGTAAE NIQQVQQSSK DIQSKSQGAS TRSCTKVHKQ GVALGRSVDL SKFTDYGELK 720 AELDKMFEFE GELVSANRNW QIVYTDNEGD MMLVGDDPWE EFCNIVRKIY IYTKEEVQKM 780 NSKSSVPRKE EPPAAGEGCA AAAANE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 18 | 359 | 17 | 357 | Auxin response factor 1 |
4ldw_A | 1e-164 | 18 | 359 | 17 | 357 | Auxin response factor 1 |
4ldw_B | 1e-164 | 18 | 359 | 17 | 357 | Auxin response factor 1 |
4ldx_A | 1e-164 | 18 | 359 | 17 | 357 | Auxin response factor 1 |
4ldx_B | 1e-164 | 18 | 359 | 17 | 357 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.87072 | 0.0 | ear| embryo| endosperm| meristem| ovary| pericarp| pollen| root| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G116557 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G116557_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067605 | 0.0 | BT067605.1 Zea mays full-length cDNA clone ZM_BFc0099C24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008656904.2 | 0.0 | auxin response factor 4 | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | A0A3L6DV03 | 0.0 | A0A3L6DV03_MAIZE; Auxin response factor | ||||
TrEMBL | C0PH36 | 0.0 | C0PH36_MAIZE; Auxin response factor | ||||
STRING | GRMZM2G116557_P04 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G116557_P03 |
Publications ? help Back to Top | |||
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