PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G116557_P02
Common NameZEAMMB73_313624, Zm.87072
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 812aa    MW: 90884.9 Da    PI: 6.574
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G116557_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.62.3e-23127228199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+e+       +  ++ +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   
  GRMZM2G116557_P02 127 FCKTLTASDTSTHGGFSVLRRHADEClpaldmsQ--SPPTQELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL-- 214
                        99*****************************644..444559************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+v+v+r+
  GRMZM2G116557_P02 215 RGENGELRVGVRRA 228
                        449999*****996 PP
2Auxin_resp112.54.1e-37253334183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ldp  Wp+S Wr Lk
  GRMZM2G116557_P02 253 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGCENLDP-LWPDSSWRYLK 334
                        89*********************************************************************.9*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-40118242IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-39121256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-20125227No hitNo description
PfamPF023622.4E-21127228IPR003340B3 DNA binding domain
SMARTSM010191.1E-22127229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956127229IPR003340B3 DNA binding domain
PfamPF065071.5E-33253334IPR010525Auxin response factor
PfamPF023093.1E-9673762IPR033389AUX/IAA domain
SuperFamilySSF542773.53E-10686766No hitNo description
PROSITE profilePS5174518.798692782IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MPPAAMALPS QAPSNSGDPL YPELWRACAG PLVTVPRVGD LVFYFPQGHI EQVEASMNQV  60
AGNPMRLYDL PSKLLCRVLN VELKAETDTD EVYAQIMLMP EPEQNDVAAE KTSSGSAAPP  120
RPAVRSFCKT LTASDTSTHG GFSVLRRHAD ECLPALDMSQ SPPTQELVAK DLHGMEWRFR  180
HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QLSNVPSSVI  240
SSQSMHLGVL ATAWHAINTK SMFTVYYKPR TSPSEFIIPY DQYMESVKNN YSIGMRFRMR  300
FEGEEAPEQR FTGTIVGCEN LDPLWPDSSW RYLKVRWDEP STIPRPDKVS PWKIEPASSP  360
PVNPLPLSRG KRPRQNAPPP SPESSVLTKE GATKIDTDSA QTPHQNSVLQ SQEQMSFRNN  420
LTESTDSDST VQKQMMWSPS PNGKVHTNFQ PRPAMDNWMP LGRRETDFKD TRSAFKDART  480
ASQSFGDTQG FFMQAYDDSR HRLSFNNQFQ DQGSAHRFAD PYFYMPQQPS LTVESGTRTQ  540
TANNDLRFWS ERNSMYGNPS DQQQGFSFGQ NTSSWLNQPL PQVEQSRVVR PHATVAPFDL  600
EKTREGSGFK IFGFQVDTTN PSPVQLSSPL SAIREHVVQT RPSAPVNELQ PVQIECLPEV  660
SVSTAGTAAE NIQQVQQSSK DIQSKSQGAS TRSCTKVHKQ GVALGRSVDL SKFTDYGELK  720
AELDKMFEFE GELVSANRNW QIVYTDNEGD MMLVGDDPWD PLLTSREFCN IVRKIYIYTK  780
EEVQKMNSKS SVPRKEEPPA AGEGCAAAAA NE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1641835917357Auxin response factor 1
4ldw_A1e-1641835917357Auxin response factor 1
4ldw_B1e-1641835917357Auxin response factor 1
4ldx_A1e-1641835917357Auxin response factor 1
4ldx_B1e-1641835917357Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.870720.0ear| embryo| endosperm| meristem| ovary| pericarp| pollen| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G116557
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G116557_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0676050.0BT067605.1 Zea mays full-length cDNA clone ZM_BFc0099C24 mRNA, complete cds.
GenBankKJ7268150.0KJ726815.1 Zea mays clone pUT3354 ARF transcription factor (ARF25) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656904.20.0auxin response factor 4
SwissprotQ5JK200.0ARFD_ORYSJ; Auxin response factor 4
TrEMBLA0A3L6DV030.0A0A3L6DV03_MAIZE; Auxin response factor
TrEMBLC0PH360.0C0PH36_MAIZE; Auxin response factor
STRINGGRMZM2G116557_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]
  3. Kishimoto N, et al.
    Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions.
    Theor. Appl. Genet., 1994. 88(6-7): p. 722-6
    [PMID:24186168]