PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G115960_P03 | ||||||||
Common Name | bHLH68, LOC100382453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 567aa MW: 60404.1 Da PI: 6.9388 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.6 | 7e-16 | 356 | 402 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq GRMZM2G115960_P03 356 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 402 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.20E-17 | 349 | 406 | No hit | No description |
SuperFamily | SSF47459 | 3.27E-20 | 350 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-20 | 356 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-13 | 356 | 402 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 358 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 567 aa Download sequence Send to blast |
MSDSNDFVEL LWENGQAVVH GRRKQHPQAA FPPFTCGAAS SSRAQENQPG TTDPVSLFKT 60 GGLFADFSSG LDAARGNGDL DDTVPWIHCP IVEEDSAAPA PALAEGYSPD FFSELHAAAL 120 AAAAAETNLS PLPPPVQHNR STPVATTSRG PEPSKEAPRI PVPGPGSRPE PQSEFAATRK 180 PRPESGGEGL MNFSLFSRPA ALVRASLQRP PPPQTGTDKV SNVTTSTRVE STVLQSASGP 240 RIAPVFTDQR TAWSQSKEVR FSCAPALAAG NLHQDMPLGR PGNNMTPQGK METKKACEVA 300 VATPSLCSGN GESWREQKRK SQAECSASQD DDLDDESGGM RGSGGRGTKR SRTAEVHNLS 360 ERRRRDRINE KMRALQELIP NCNKIDKASM LDEAIEYLKT LQLQVQMMAM GSGLCIPPML 420 LPRAMQLQIP SIAHFHHLGM GLGYGMGVLD MNSTAAVPFQ PIPGAHYTCP MIPGTPPQGL 480 GIGMPGTNTM PVFGLPGQAI HPSASSVQPF PSLAGLPVRP NLAPQVPAVM ANMVQEQQQG 540 VATQQQQSLN NEAQQKANTG DPQILQK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 360 | 365 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27306 | 0.0 | aerial organ| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G115960 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G115960_P03 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947804 | 0.0 | EU947804.1 Zea mays clone 360176 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021312914.1 | 0.0 | transcription factor APG-like isoform X2 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A060D2B6 | 0.0 | A0A060D2B6_MAIZE; BHLH transcription factor (Fragment) | ||||
STRING | GRMZM2G115960_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 9e-35 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G115960_P03 |
Publications ? help Back to Top | |||
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