PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G115960_P01

Common Name

LOC100382453

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

bHLH

Protein Properties

Length: 398aa MW: 42733.6 Da PI: 7.9623

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G115960_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.7	1.1e-09	361	393	4	39
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKls 39 hn ErrRRdriN+++ L+el+P++ ++ + s GRMZM2G115960_P01 361 VHNLSERRRRDRINEKMRALQELIPNC---NKVRRS 393 5*************************8...666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.68E-10	349	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.38E-8	354	392	No hit	No description
PROSITE profile	PS50888	12.493	357	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-7	361	392	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	361	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MCAWCRSDSN DFVELLWENG QAVVHGRRKQ HPQAAFPPFT CGAASSSRAQ ENQPGTTDPV 60 SLFKTGGLFA DFSSGLDAAR GNGDLDDTVP WIHCPIVEED SAAPAPALAE GYSPDFFSEL 120 HAAALAAAAA ETNLSPLPPP VQHNRSTPVA TTSRGPEPSK EAPRIPVPGP GSRPEPQSEF 180 AATRKPRPES GGEGLMNFSL FSRPAALVRA SLQRPPPPQT GTDKVSNVTT STRVESTVLQ 240 SASGPRIAPV FTDQRTAWSQ SKEVRFSCAP ALAAGNLHQD MPLGRPGNNM TPQGKMETKK 300 ACEVAVATPS LCSGNGESWR EQKRKSQAEC SASQDDDLDD ESGGMRGSGG RGTKRSRTAE 360 VHNLSERRRR DRINEKMRAL QELIPNCNKV RRSISTIF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MCAWCRSDSN DFVELLWENG QAVVHGRRKQ HPQAAFPPFT CGAASSSRAQ ENQPGTTDPV  60
SLFKTGGLFA DFSSGLDAAR GNGDLDDTVP WIHCPIVEED SAAPAPALAE GYSPDFFSEL  120
HAAALAAAAA ETNLSPLPPP VQHNRSTPVA TTSRGPEPSK EAPRIPVPGP GSRPEPQSEF  180
AATRKPRPES GGEGLMNFSL FSRPAALVRA SLQRPPPPQT GTDKVSNVTT STRVESTVLQ  240
SASGPRIAPV FTDQRTAWSQ SKEVRFSCAP ALAAGNLHQD MPLGRPGNNM TPQGKMETKK  300
ACEVAVATPS LCSGNGESWR EQKRKSQAEC SASQDDDLDD ESGGMRGSGG RGTKRSRTAE  360
VHNLSERRRR DRINEKMRAL QELIPNCNKV RRSISTIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	370	ERRRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.27306	0.0	aerial organ\| meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G115960

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Function -- GeneRIF ? help Back to Top
ZmPIF1 plays an important role in the ABA-mediated regulation of stomatal closure to control water loss [PMID: 29327440]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G115960_P01

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064399	0.0	BT064399.1 Zea mays full-length cDNA clone ZM_BFc0165L03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001168665.1	0.0	uncharacterized protein LOC100382453
Swissprot	Q0JNI9	1e-111	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	C0P7Y0	0.0	C0P7Y0_MAIZE; Uncharacterized protein
STRING	GRMZM2G115960_P03	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-16	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	GRMZM2G115960_P01
Entrez Gene	100382453

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224] Gao Y, et al. A maize phytochrome-interacting factors protein ZmPIF1 enhances drought tolerance by inducing stomatal closure and improves grain yield in Oryza sativa. Plant Biotechnol. J., 2018. 16(7): p. 1375-1387 [PMID:29327440]