PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G115516_P01

Common Name

TCP5, Zm.80385

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

TCP

Protein Properties

Length: 386aa MW: 39359.4 Da PI: 9.8803

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G115516_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.8	4.9e-35	61	183	2	123
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssss 81 g+kdrhsk++T +g RdRRvRlsa++a++f+dLqd+LGfd++sk+ieWL+++a ai +l+++ + + GRMZM2G115516_P01 61 SGGKDRHSKVYTTKGIRDRRVRLSAPTAIQFYDLQDRLGFDQPSKAIEWLINAAASAIEKLPELdpaafaalpapgG------------ADA 140 689*************************************************************4443333322221............222 PP TCP 82 asnsssgkaaksaakskksqksaasalnlak.esrakararar 123 a+n++++++ +++a s+ s++s+ s l+l++ + r a a+ r GRMZM2G115516_P01 141 AGNDKQQQQGSKSAGSSTSETSKGSELSLSRsDGRGGAAAQDR 183 2223333333444444455555555566666555544444443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.6E-34	62	182	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.771	63	121	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEAAAVGDGA PAGRSHQGAK RARGGAVKGS ETEAAAWGQP PPLPPPPGPG AGSRIYRVGA 60 SGGKDRHSKV YTTKGIRDRR VRLSAPTAIQ FYDLQDRLGF DQPSKAIEWL INAAASAIEK 120 LPELDPAAFA ALPAPGGADA AGNDKQQQQG SKSAGSSTSE TSKGSELSLS RSDGRGGAAA 180 QDRVVTVAST SAQAASFTEL LTGVASAGAI SAGEHRQSWH QQPNVSAGAG ADRVGIAHNG 240 KGAHGLSTAT HAFSGPAAAK FGNAPPFGLV PAQPFDFTIP IEMPHFSLGQ DTSAASSSGA 300 GDYSLSFSMS SGFLGANRGT LQSNSQSNFS GHHHQQLQRL DGPLLFGHAH AAAAMHPASE 360 NQLTASAALQ LWDGLRHSGM KEKGRS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEAAAVGDGA PAGRSHQGAK RARGGAVKGS ETEAAAWGQP PPLPPPPGPG AGSRIYRVGA  60
SGGKDRHSKV YTTKGIRDRR VRLSAPTAIQ FYDLQDRLGF DQPSKAIEWL INAAASAIEK  120
LPELDPAAFA ALPAPGGADA AGNDKQQQQG SKSAGSSTSE TSKGSELSLS RSDGRGGAAA  180
QDRVVTVAST SAQAASFTEL LTGVASAGAI SAGEHRQSWH QQPNVSAGAG ADRVGIAHNG  240
KGAHGLSTAT HAFSGPAAAK FGNAPPFGLV PAQPFDFTIP IEMPHFSLGQ DTSAASSSGA  300
GDYSLSFSMS SGFLGANRGT LQSNSQSNFS GHHHQQLQRL DGPLLFGHAH AAAAMHPASE  360
NQLTASAALQ LWDGLRHSGM KEKGRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-24	68	122	1	55	Putative transcription factor PCF6
5zkt_B	2e-24	68	122	1	55	Putative transcription factor PCF6
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.80385	0.0	shoot

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G115516

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G115516_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067330	0.0	BT067330.1 Zea mays full-length cDNA clone ZM_BFc0013I03 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001147788.1	0.0	uncharacterized LOC100281398
Swissprot	Q10CE8	2e-95	PCF6_ORYSJ; Transcription factor PCF6
TrEMBL	C0PGB1	0.0	C0PGB1_MAIZE; TCP transcription factor
STRING	GRMZM2G115516_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3094	32	71
Representative plant	OGRP180	15	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	4e-30	TCP family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G115516_P01
Entrez Gene	100281398

Publications ? help Back to Top
Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034]