PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G115388_P01 | ||||||||
Common Name | LOC100277305, LOC103647448, Zm.131212 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 14693.4 Da PI: 9.2144 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.3e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H GRMZM2G115388_P01 24 FVCTYCDRKFFTSQALGGHQNAH 46 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.22E-8 | 14 | 69 | No hit | No description |
PROSITE profile | PS50157 | 11.011 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MEQELSLELT LFHPSVSPEP PGYFVCTYCD RKFFTSQALG GHQNAHKYER SLAKRRREIA 60 TALRAHGAAA TATGVQDAAA MGSRDVPARP QGTGSGADKS ATRMDKHKAP ADDAAPAPAA 120 SSNRKRSSEE LDLSLRL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G115388 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G115388_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU967974 | 0.0 | EU967974.1 Zea mays clone 312184 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144380.1 | 1e-96 | uncharacterized protein LOC100277305 | ||||
Refseq | XP_008670210.1 | 1e-96 | zinc finger protein 2 | ||||
TrEMBL | A0A3L6G0Q7 | 3e-95 | A0A3L6G0Q7_MAIZE; Zinc finger protein 2 | ||||
TrEMBL | B6TSK9 | 3e-95 | B6TSK9_MAIZE; Zinc finger protein 2 | ||||
STRING | GRMZM2G115388_P01 | 6e-96 | (Zea mays) | ||||
STRING | GRMZM2G403590_P01 | 6e-96 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57520.1 | 2e-15 | zinc finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G115388_P01 |
Entrez Gene | 100277305 | 103647448 |
Publications ? help Back to Top | |||
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