PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G114998_P01

Common Name

si606039h07, ZEAMMB73_343804, Zm.4624

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

Dof

Protein Properties

Length: 367aa MW: 37709.9 Da PI: 9.0304

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G114998_P01	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.3e-39	81	142	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss GRMZM2G114998_P01 81 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 142 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-25	80	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-33	83	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MDAAQWHQGP LGLGKPMEEM LMAGNAANPN PPPAAAPSAP GAQTQRGGGA PPPAAGAAAP 60 RAGATGGAAP AGTERRPRPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT 120 EGGSLRNVPV GGGSRKNKRS SSSAASSTSA AMSGTVSVKN PKLVHEGAHH DLNLAFPHHN 180 NGRALQPPEF PSSFPSLESS SVCYPGPAML GNGAAGRGMG ALSAMELLRS TGCYVPLQHV 240 QLGMPAEYAA PAGFTLGEFR IPPPPPPQSQ SVLGFSLDTH GTGGYSAGGL QESAVGRMLF 300 PFEDLKPAVT TAGGGASNDG ADHRQNDHRK DQAAGDGSSV TGGHETPGFW SNSLIGNGSS 360 NGGGGPW

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MDAAQWHQGP LGLGKPMEEM LMAGNAANPN PPPAAAPSAP GAQTQRGGGA PPPAAGAAAP  60
RAGATGGAAP AGTERRPRPQ KEKALNCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT  120
EGGSLRNVPV GGGSRKNKRS SSSAASSTSA AMSGTVSVKN PKLVHEGAHH DLNLAFPHHN  180
NGRALQPPEF PSSFPSLESS SVCYPGPAML GNGAAGRGMG ALSAMELLRS TGCYVPLQHV  240
QLGMPAEYAA PAGFTLGEFR IPPPPPPQSQ SVLGFSLDTH GTGGYSAGGL QESAVGRMLF  300
PFEDLKPAVT TAGGGASNDG ADHRQNDHRK DQAAGDGSSV TGGHETPGFW SNSLIGNGSS  360
NGGGGPW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Zm.4624	0.0	ear\| meristem

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G114998

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in germinating seeds 3 to 5 days after imbibition. {ECO:0000269\|PubMed:11470159}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G114998_P01

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU973885	0.0	EU973885.1 Zea mays clone 423574 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008677042.1	0.0	hypothetical protein
Swissprot	B9F1L8	1e-111	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	K7UHV4	0.0	K7UHV4_MAIZE; Dof zinc finger protein DOF2.5
STRING	GRMZM2G114998_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	GRMZM2G114998_P01
Entrez Gene	100278484

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Alexandrov NN, et al. Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol. Biol., 2009. 69(1-2): p. 179-94 [PMID:18937034]