PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114873_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 323aa    MW: 33949 Da    PI: 7.8387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114873_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.1e-06295318629
                        HHHHHHHHHHHHHHHHHHHCTSCC CS
                HLH   6 nerErrRRdriNsafeeLrellPk 29 
                        +++Er RR ri +++ +L++l+P+
  GRMZM2G114873_P01 295 SIAERERRTRISKRLKKLQDLVPN 318
                        689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.017289323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-5292321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-4293323No hitNo description
Gene3DG3DSA:4.10.280.107.0E-5294320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MNHLTPALHG AMRPPSAQGQ GLARYGSAPG SLLAAIADSV TRGDPAPPPP PVSRFYSAES  60
SGLTSCDSSC RTDCGRPPLE RAYGGSGEIR VPPPLQQQQH HLLAPPAASP LFRHSSSPAG  120
LLSRLMTDPH GMAASGGAMG SYTQAGSDAA LGPGHGHGHA QLSSQWSFSR QDLPQISEMG  180
MIPADIGESI VGAGGCNSSS DAAQSSSYLS RTFSVGSWDD TNSIMFSSAP CKKPKVDPAA  240
GADDMVTNFS TIDPQFGLSN SSLELPGMDD YLQLQQDSVA CRVRARRGCA THPRSIAERE  300
RRTRISKRLK KLQDLVPNMD KVS
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114873
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114873_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9685700.0EU968570.1 Zea mays clone 322358 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001332786.10.0uncharacterized protein LOC100284495
TrEMBLA0A1D6N4D80.0A0A1D6N4D8_MAIZE; BHLH-transcription factor 132
STRINGGRMZM2G114873_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-26bHLH family protein