PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114820_P01
Common NameZEAMMB73_126361
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 451aa    MW: 48586.6 Da    PI: 5.5504
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114820_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-18150197455
                AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a +++++g
  GRMZM2G114820_P01 150 HGIRRRP-WGKWAAEIRDPSK---GVRVWLGTYSTAEEAARAYDAEARRIRG 197
                        7******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.810.101.5E-5106134IPR000095CRIB domain
CDDcd001329.52E-5106146No hitNo description
SMARTSM002857.8E-6108142IPR000095CRIB domain
PROSITE profilePS501087.442108121IPR000095CRIB domain
PROSITE profilePS5103221.997148205IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-20148206IPR016177DNA-binding domain
PRINTSPR003675.6E-9149160IPR001471AP2/ERF domain
PfamPF008472.1E-10150197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-28150207IPR001471AP2/ERF domain
CDDcd000181.02E-28151206No hitNo description
SMARTSM003802.6E-29151211IPR001471AP2/ERF domain
PRINTSPR003675.6E-9171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVLSAEIRFG HQIPYPTTTL TPTRRRKKRK RKTRRSSRGW RAEEMDEATV SSPLMLPATK  60
ARGGVSVVEM VMGALRRSLM LCSSSASAGV REPEQEEEWV TPPGGMQIGG PTDVRHASHV  120
TFDRFIGFLD LPADLEPDVP RPVPSASFLH GIRRRPWGKW AAEIRDPSKG VRVWLGTYST  180
AEEAARAYDA EARRIRGKKA KVNFRDEAAA AGAQKPTATA TTPTACASAA RLGPPPPKFR  240
ADEVFGNMNG GNNDLFMIMF TFSDSSSKVV RVEPGEGAAG FLPAVEVLDD EPLLPGSKRS  300
AANMMLLSDQ SSDSYGSCDL GWDWDDDTMT SDYASVFAPA APSNVVPAWY TQGGPVSKRT  360
RSSYGYGVAM LQQGDGAQAM PGGFDPETNY QYQPLPYVVE SSPSDGVSTH DMDCLQMMRA  420
GDVPQDGASS GGGGGGDIWS LDELLMAAVA Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16151204559ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-16151204862ATERF1
3gcc_A3e-16151204862ATERF1
5wx9_A1e-151512041771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12328RRRKKR
22329RRRKKRK
32530RKKRKR
42531RKKRKRK
52631KKRKRK
62634KKRKRKTRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1566610.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114820
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114820_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0859350.0BT085935.1 Zea mays full-length cDNA clone ZM_BFc0087B20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008660092.10.0uncharacterized protein LOC103639077
TrEMBLK7VHR80.0K7VHR8_MAIZE; Putative AP2/EREBP transcription factor superfamily protein
STRINGGRMZM2G114820_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-18ERF family protein