PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114775_P01
Common NameGATA18, LOC100276694
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 163aa    MW: 17989.5 Da    PI: 10.626
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114775_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.5e-182862135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ C+ttkTplWR gp g+ +LCnaCG++yrkk++
  GRMZM2G114775_P01 28 CTECHTTKTPLWRGGPCGPMSLCNACGIRYRKKRR 62
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.81E-132161No hitNo description
PROSITE profilePS5011412.5582258IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-152274IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-142362IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.50E-142762No hitNo description
PfamPF003205.9E-162862IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDSSVEKQGS VALDPDERAP ASGETKACTE CHTTKTPLWR GGPCGPMSLC NACGIRYRKK  60
RREAMGLESS SKAATAGGSE HQQQQRKKKA TAAAAAASSK RERERERERN KEADEVTVEL  120
RAVGFGKEVV LKQRRRMRRR RRLGEEERAA ILLMALSSGV VYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138QRRRMRR
2134139RRMRRR
3134141RRMRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.944460.0ear| endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114775
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114775_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280130.0KJ728013.1 Zea mays clone pUT6148 C2C2-GATA transcription factor (GATA18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001143893.17e-82uncharacterized protein LOC100276694
TrEMBLA0A060D8341e-113A0A060D834_MAIZE; C2C2-GATA transcription factor (Fragment)
STRINGGRMZM2G114775_P011e-113(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-18GATA transcription factor 16