PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G114680_P03 | ||||||||
Common Name | ZEAMMB73_705287, Zm.21676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 170aa MW: 18488.3 Da PI: 10.8903 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 125.1 | 8.1e-39 | 3 | 102 | 83 | 183 |
GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAee 171 +f+++ P+l+f+hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+ +gpp++RiTg g+ ++++l +tg+rL+ fA++ GRMZM2G114680_P03 3 AFNQIAPFLRFAHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARS 90 6****************************************************988888***********....9***************** PP GRAS 172 lgvpfefnvlva 183 +++pf+f++l+ GRMZM2G114680_P03 91 IQLPFHFTPLLL 102 *********854 PP | |||||||
2 | GRAS | 37.1 | 4.6e-12 | 117 | 170 | 311 | 363 |
GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 le+W ++ + aGF + pls +a++qa+lllr ++ s+gy v+e +g+ +lgW+ GRMZM2G114680_P03 117 GLERWGAAARGAGFAARPLSAFAVSQARLLLRLHYpSEGYLVQEARGACFLGWQ 170 6899*************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.642 | 1 | 170 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-36 | 3 | 102 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-9 | 117 | 170 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
YLAFNQIAPF LRFAHLTANQ AILDAVEGAR RIHILDLDAA HGVQWPPLLQ AIAERADPAA 60 GPPEVRITGA GADRDTLLRT GSRLRAFARS IQLPFHFTPL LLSCAALGPS GGRWWRGLER 120 WGAAARGAGF AARPLSAFAV SQARLLLRLH YPSEGYLVQE ARGACFLGWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-24 | 1 | 100 | 99 | 195 | Protein SCARECROW |
5b3h_A | 7e-24 | 1 | 100 | 98 | 194 | Protein SCARECROW |
5b3h_D | 7e-24 | 1 | 100 | 98 | 194 | Protein SCARECROW |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G114680 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G114680_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP876558 | 1e-158 | KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437271.2 | 5e-65 | LOW QUALITY PROTEIN: protein MONOCULM 1 | ||||
Refseq | XP_004965904.2 | 5e-65 | protein MONOCULM 1 | ||||
Refseq | XP_008659845.1 | 5e-65 | protein MONOCULM 1 | ||||
Refseq | XP_012700859.1 | 5e-65 | protein MONOCULM 1 | ||||
Swissprot | Q84MM9 | 1e-62 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A141NWT7 | 4e-64 | A0A141NWT7_9POAL; Monoculm 1 | ||||
TrEMBL | A0A1W0VTV7 | 4e-64 | A0A1W0VTV7_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A3L6DCN2 | 4e-64 | A0A3L6DCN2_MAIZE; Protein MONOCULM 1 | ||||
STRING | Sb10g023950.1 | 5e-65 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 4e-28 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G114680_P03 |