PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G114680_P02 | ||||||||
Common Name | GRAS70, ZEAMMB73_705287, Zm.21676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 467aa MW: 49942.9 Da PI: 9.5395 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 304.7 | 2.3e-93 | 84 | 467 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 ++l+l+cA+ ++ gdl++a++++ l asp++d+ Rla +f++ALa r + l + +++ + aa+ +f+++ P+l+f GRMZM2G114680_P02 84 RDLVLACADLLQRGDLQAARRAVGVLLSAASPRADAADRLAYHFARALALRADA--RAAATGLVAAAAA---RPASSAAYLAFNQIAPFLRF 170 6899***********************************************998..3333333333333...4556778899********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181 +hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+ +gpp++RiTg g+ ++++l +tg+rL+ fA+++++pf+f++l GRMZM2G114680_P02 171 AHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARSIQLPFHFTPLl 258 ******************************************988888***********....9***************************9 PP GRAS 182 ...................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse... 251 +++ ++ ++++L+++p+E+laVn+v+ lh+l ++e ++Lk vk + P vv+++e+e+ ++ GRMZM2G114680_P02 259 lscaathqqqvvtsastttNTTTSSAATTSQLELHPDETLAVNCVMFLHKLG-----GHDELAAFLKWVKAMAPAVVTIAERETIGGGFdri 345 ***99999998877666433334555699**********************8.....2233578*******************655443344 PP GRAS 252 .sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 ++ +r + a+++ysa+f++lea++p+ s+er vE+e+lgrei ++ +g + + le+W ++ + aGF + pls +a++qa+lllr GRMZM2G114680_P02 346 dDLPQRSAVAMDHYSAVFEALEATVPPGSRERLAVEHEVLGREIDAALGPSGGR---WWRGLERWGAAARGAGFAARPLSAFAVSQARLLLR 434 49***********************************************99987...7899******************************* PP GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ s+gy v+e +g+ +lgW++rpL+svS+W+ GRMZM2G114680_P02 435 LHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 467 ********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 51.398 | 57 | 446 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.9E-91 | 84 | 467 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0005634 | Cellular Component | nucleus |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MHVLPLALHP LMLLACHHRR LRPPPPLKKK KLGLRRPTTD EAMLSSLHHH SSSSSDTDNN 60 NGNNKNGSSN NSDVLAAAAV PSARDLVLAC ADLLQRGDLQ AARRAVGVLL SAASPRADAA 120 DRLAYHFARA LALRADARAA ATGLVAAAAA RPASSAAYLA FNQIAPFLRF AHLTANQAIL 180 DAVEGARRIH ILDLDAAHGV QWPPLLQAIA ERADPAAGPP EVRITGAGAD RDTLLRTGSR 240 LRAFARSIQL PFHFTPLLLS CAATHQQQVV TSASTTTNTT TSSAATTSQL ELHPDETLAV 300 NCVMFLHKLG GHDELAAFLK WVKAMAPAVV TIAERETIGG GFDRIDDLPQ RSAVAMDHYS 360 AVFEALEATV PPGSRERLAV EHEVLGREID AALGPSGGRW WRGLERWGAA ARGAGFAARP 420 LSAFAVSQAR LLLRLHYPSE GYLVQEARGA CFLGWQTRPL LSVSSWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-47 | 90 | 466 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-47 | 90 | 466 | 25 | 377 | Protein SCARECROW |
5hyz_A | 1e-47 | 111 | 467 | 31 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G114680 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G114680_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP876558 | 0.0 | KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008659845.1 | 0.0 | protein MONOCULM 1 | ||||
Swissprot | Q84MM9 | 0.0 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A1D6P4Z1 | 0.0 | A0A1D6P4Z1_MAIZE; Scarecrow-like protein 18 | ||||
STRING | GRMZM2G114680_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 9e-68 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G114680_P02 |
Entrez Gene | 103638811 |