PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114680_P01
Common NameGRAS70, ZEAMMB73_705287, Zm.21676
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 467aa    MW: 49942.9 Da    PI: 9.5395
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114680_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.72.3e-93844672374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        ++l+l+cA+ ++ gdl++a++++  l   asp++d+  Rla +f++ALa r        +  l + +++      + aa+ +f+++ P+l+f
  GRMZM2G114680_P01  84 RDLVLACADLLQRGDLQAARRAVGVLLSAASPRADAADRLAYHFARALALRADA--RAAATGLVAAAAA---RPASSAAYLAFNQIAPFLRF 170
                        6899***********************************************998..3333333333333...4556778899********** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl. 181
                        +hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+   +gpp++RiTg g+    ++++l +tg+rL+ fA+++++pf+f++l 
  GRMZM2G114680_P01 171 AHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARSIQLPFHFTPLl 258
                        ******************************************988888***********....9***************************9 PP

               GRAS 182 ...................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse... 251
                                            +++ ++ ++++L+++p+E+laVn+v+ lh+l       ++e  ++Lk vk + P vv+++e+e+  ++    
  GRMZM2G114680_P01 259 lscaathqqqvvtsastttNTTTSSAATTSQLELHPDETLAVNCVMFLHKLG-----GHDELAAFLKWVKAMAPAVVTIAERETIGGGFdri 345
                        ***99999998877666433334555699**********************8.....2233578*******************655443344 PP

               GRAS 252 .sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                         ++ +r + a+++ysa+f++lea++p+ s+er  vE+e+lgrei  ++  +g +     + le+W ++ + aGF + pls +a++qa+lllr
  GRMZM2G114680_P01 346 dDLPQRSAVAMDHYSAVFEALEATVPPGSRERLAVEHEVLGREIDAALGPSGGR---WWRGLERWGAAARGAGFAARPLSAFAVSQARLLLR 434
                        49***********************************************99987...7899******************************* PP

               GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         ++ s+gy v+e +g+ +lgW++rpL+svS+W+
  GRMZM2G114680_P01 435 LHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 467
                        ********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.39857446IPR005202Transcription factor GRAS
PfamPF035147.9E-9184467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MHVLPLALHP LMLLACHHRR LRPPPPLKKK KLGLRRPTTD EAMLSSLHHH SSSSSDTDNN  60
NGNNKNGSSN NSDVLAAAAV PSARDLVLAC ADLLQRGDLQ AARRAVGVLL SAASPRADAA  120
DRLAYHFARA LALRADARAA ATGLVAAAAA RPASSAAYLA FNQIAPFLRF AHLTANQAIL  180
DAVEGARRIH ILDLDAAHGV QWPPLLQAIA ERADPAAGPP EVRITGAGAD RDTLLRTGSR  240
LRAFARSIQL PFHFTPLLLS CAATHQQQVV TSASTTTNTT TSSAATTSQL ELHPDETLAV  300
NCVMFLHKLG GHDELAAFLK WVKAMAPAVV TIAERETIGG GFDRIDDLPQ RSAVAMDHYS  360
AVFEALEATV PPGSRERLAV EHEVLGREID AALGPSGGRW WRGLERWGAA ARGAGFAARP  420
LSAFAVSQAR LLLRLHYPSE GYLVQEARGA CFLGWQTRPL LSVSSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-479046625377Protein SCARECROW
5b3h_D1e-479046625377Protein SCARECROW
5hyz_A1e-4711146731375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114680
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114680_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP8765580.0KP876558.1 Saccharum hybrid cultivar ROC22 monoculm 1 (MOC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659845.10.0protein MONOCULM 1
SwissprotQ84MM90.0MOC_ORYSJ; Protein MONOCULM 1
TrEMBLA0A1D6P4Z10.0A0A1D6P4Z1_MAIZE; Scarecrow-like protein 18
STRINGGRMZM2G114680_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.19e-68GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]