PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G114660_P01 | ||||||||
Common Name | LOC100285829, ZEAMMB73_712738 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 339aa MW: 35068 Da PI: 6.7035 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.8 | 1.9e-05 | 5 | 26 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H GRMZM2G114660_P01 5 TCKLCSRRFASPRALAGHMRSH 26 6********************9 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00092 | 259 | 279 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+Cg++F + L H+r H GRMZM2G114660_P01 259 ECPHCGRVF-SGQALGEHMRFH 279 5********.888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.39 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0078 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 6.59E-6 | 5 | 26 | No hit | No description |
Pfam | PF13912 | 8.8E-5 | 6 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 6.59E-6 | 183 | 207 | No hit | No description |
Pfam | PF13912 | 2.6E-8 | 188 | 212 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 188 | 208 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-5 | 258 | 279 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.1 | 258 | 279 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGKNTCKLCS RRFASPRALA GHMRSHYMAA AKETAATATA AAAAAAAAAK QQISSASSAS 60 TSIAAADEEV GLMMTASTNG LRENPKRSLG VADVGFSDRE SETESTPPQA KRVNAAGIWG 120 EPEASSSLSE VATPEDVALS LMMLSRDSWP SGVLAEKDGS DDRSDDGYAP PAPPRRAPAP 180 VVEKRTQFQC VACKKVFRSY QALGGHRASN VRGGRGGCCA PPVAPPAPPP QPQPPLSPLP 240 EHRDGGEDED MNAKQQPREC PHCGRVFSGQ ALGEHMRFHV CASSPLAGTG TGTATASTTS 300 AATPASPTNS PSMIDLNVAP QSEEVEHSAV SDPRFNPGA |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G114660 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G114660_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974190 | 0.0 | EU974190.1 Zea mays clone 442455 cys2/His2 zinc-finger transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152191.1 | 1e-167 | cys2/His2 zinc-finger transcription factor | ||||
TrEMBL | A0A3L6F4S1 | 0.0 | A0A3L6F4S1_MAIZE; Zinc finger protein ZAT4 | ||||
TrEMBL | K7UHQ6 | 0.0 | K7UHQ6_MAIZE; Cys2/His2 zinc-finger transcription factor | ||||
STRING | GRMZM2G114660_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3518 | 33 | 77 | Representative plant | OGRP2404 | 10 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 5e-16 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G114660_P01 |