PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G114613_P05 | ||||||||
Common Name | cl889_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LSD | ||||||||
Protein Properties | Length: 112aa MW: 11581.6 Da PI: 8.6516 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 50.9 | 2.5e-16 | 18 | 42 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ GRMZM2G114613_P05 18 CGQCQTVLMYPYGAPSVKCAVCNFI 42 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.0E-11 | 15 | 44 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.3E-14 | 18 | 42 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MLTIFVHPAV SSIAHVNCGQ CQTVLMYPYG APSVKCAVCN FITNVGGVTP MIPLPPPALT 60 ASSGTSYIIP SISVPTNQPR NVTVVVENPM TVDDKGKLVS NVVVGVTSGG KK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4177 | 1e-175 | embryo| endosperm| meristem| ovary| pollen| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G114613 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G114613_P05 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT069674 | 0.0 | BT069674.1 Zea mays full-length cDNA clone ZM_BFb0207B08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020405094.1 | 3e-67 | uncharacterized protein LOC100194364 isoform X2 | ||||
Swissprot | Q2QMB3 | 3e-45 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | C0PN05 | 3e-73 | C0PN05_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G114613_P02 | 6e-65 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.6 | 4e-18 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G114613_P05 |
Publications ? help Back to Top | |||
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