PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G114613_P03 | ||||||||
Common Name | cl889_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LSD | ||||||||
Protein Properties | Length: 178aa MW: 18659 Da PI: 8.4376 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43 | 7.5e-14 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrtlL YPrGApsV+Ca+C+ V GRMZM2G114613_P03 7 CHGCRTLLFYPRGAPSVCCAVCHVV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 38.2 | 2.3e-12 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y r A+ VRC++CdtV GRMZM2G114613_P03 46 CGGCQTLLMYARSATTVRCSCCDTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49.9 | 5.1e-16 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+++ GRMZM2G114613_P03 84 CGQCQTVLMYPYGAPSVKCAVCNFI 108 ***********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.1E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.0E-12 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.3E-12 | 44 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-10 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.3E-11 | 81 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.8E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MQSQIVCHGC RTLLFYPRGA PSVCCAVCHV VTNVPPPAME MARLICGGCQ TLLMYARSAT 60 TVRCSCCDTV NLVRPVSSIA HVNCGQCQTV LMYPYGAPSV KCAVCNFITN VGGVTPMIPL 120 PPPALTASSG TSYIIPSISV PTNQPRNVTV VVENPMTVDD KGKLVSNVVV GVTSGGKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4177 | 0.0 | embryo| endosperm| meristem| ovary| pollen| root| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G114613 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G114613_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036892 | 0.0 | BT036892.1 Zea mays full-length cDNA clone ZM_BFb0146G16 mRNA, complete cds. | |||
GenBank | BT084672 | 0.0 | BT084672.1 Zea mays full-length cDNA clone ZM_BFb0156E14 mRNA, complete cds. | |||
GenBank | BT087552 | 0.0 | BT087552.1 Zea mays full-length cDNA clone ZM_BFb0107N02 mRNA, complete cds. | |||
GenBank | EU953856 | 0.0 | EU953856.1 Zea mays clone 1447813 18S subunit ribosomal protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132871.1 | 1e-124 | uncharacterized protein LOC100194364 | ||||
Refseq | XP_008672226.1 | 1e-125 | uncharacterized protein LOC100194364 isoform X1 | ||||
Swissprot | Q2QMB3 | 6e-92 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | C4J1H5 | 1e-123 | C4J1H5_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G114613_P02 | 1e-123 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-54 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G114613_P03 |
Publications ? help Back to Top | |||
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