PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114613_P03
Common Namecl889_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 178aa    MW: 18659 Da    PI: 8.4376
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114613_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1437.5e-14731125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCrtlL YPrGApsV+Ca+C+ V
  GRMZM2G114613_P03  7 CHGCRTLLFYPRGAPSVCCAVCHVV 31
                       ***********************98 PP

2zf-LSD138.22.3e-124670125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       CggC+tlL+Y r A+ VRC++CdtV
  GRMZM2G114613_P03 46 CGGCQTLLMYARSATTVRCSCCDTV 70
                       ************************9 PP

3zf-LSD149.95.1e-1684108125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+C+t+L+YP+GApsV+Ca+C+++
  GRMZM2G114613_P03  84 CGQCQTVLMYPYGAPSVKCAVCNFI 108
                        ***********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.1E-13434IPR005735Zinc finger, LSD1-type
PfamPF069438.0E-12731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-124473IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-104670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-1181110IPR005735Zinc finger, LSD1-type
PfamPF069434.8E-1484108IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQSQIVCHGC RTLLFYPRGA PSVCCAVCHV VTNVPPPAME MARLICGGCQ TLLMYARSAT  60
TVRCSCCDTV NLVRPVSSIA HVNCGQCQTV LMYPYGAPSV KCAVCNFITN VGGVTPMIPL  120
PPPALTASSG TSYIIPSISV PTNQPRNVTV VVENPMTVDD KGKLVSNVVV GVTSGGKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41770.0embryo| endosperm| meristem| ovary| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114613
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114613_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368920.0BT036892.1 Zea mays full-length cDNA clone ZM_BFb0146G16 mRNA, complete cds.
GenBankBT0846720.0BT084672.1 Zea mays full-length cDNA clone ZM_BFb0156E14 mRNA, complete cds.
GenBankBT0875520.0BT087552.1 Zea mays full-length cDNA clone ZM_BFb0107N02 mRNA, complete cds.
GenBankEU9538560.0EU953856.1 Zea mays clone 1447813 18S subunit ribosomal protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132871.11e-124uncharacterized protein LOC100194364
RefseqXP_008672226.11e-125uncharacterized protein LOC100194364 isoform X1
SwissprotQ2QMB36e-92LOL2_ORYSJ; Protein LOL2
TrEMBLC4J1H51e-123C4J1H5_MAIZE; Uncharacterized protein
STRINGGRMZM2G114613_P021e-123(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-54lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]