PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114613_P02
Common Namecl889_1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LSD
Protein Properties Length: 309aa    MW: 33165.9 Da    PI: 8.6984
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114613_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.91.6e-13138162125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        C+gCrtlL YPrGApsV+Ca+C+ V
  GRMZM2G114613_P02 138 CHGCRTLLFYPRGAPSVCCAVCHVV 162
                        ***********************98 PP
2zf-LSD137.24.9e-12177201125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        CggC+tlL+Y r A+ VRC++CdtV
  GRMZM2G114613_P02 177 CGGCQTLLMYARSATTVRCSCCDTV 201
                        ************************9 PP
3zf-LSD148.91.1e-15215239125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+C+t+L+YP+GApsV+Ca+C+++
  GRMZM2G114613_P02 215 CGQCQTVLMYPYGAPSVKCAVCNFI 239
                        ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010539.0E-13135165IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-11138162IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.0E-12175204IPR005735Zinc finger, LSD1-type
PfamPF069432.8E-10177201IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.0E-11212241IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-13215239IPR005735Zinc finger, LSD1-type
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0004006anatomymesophyll cell
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFRCLAGWMR RVRRSVERSN RAGKLGRSVW GNRIAWMGFG IGREAGGCLF SPVPKLSVDD  60
GDNRGRAKLI ECLADVGLGG ICWIANCSIW CTKNWTALGL GLGLGWDCFA FDCVYAYYVL  120
IRCGFGRNFA DMQSQIVCHG CRTLLFYPRG APSVCCAVCH VVTNVPPPAM EMARLICGGC  180
QTLLMYARSA TTVRCSCCDT VNLVRPVSSI AHVNCGQCQT VLMYPYGAPS VKCAVCNFIT  240
NVGGVTPMIP LPPPALTASS GTSYIIPSIS VPTNQPRNVT VVVENPMTVD DKGKLVSNVV  300
VGVTSGGKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41770.0embryo| endosperm| meristem| ovary| pollen| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114613
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114613_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0368920.0BT036892.1 Zea mays full-length cDNA clone ZM_BFb0146G16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132871.10.0uncharacterized protein LOC100194364
SwissprotQ2QMB34e-90LOL2_ORYSJ; Protein LOL2
TrEMBLB4FIF40.0B4FIF4_MAIZE; Protein LSD1
STRINGGRMZM2G114613_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-52lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]