PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G114461_P01 | ||||||||
Common Name | LOC100280229 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | FAR1 | ||||||||
Protein Properties | Length: 704aa MW: 80279.7 Da PI: 7.7826 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.6 | 4e-14 | 44 | 80 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk ++ GRMZM2G114461_P01 44 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 80 5667777777************************876 PP | |||||||
2 | FAR1 | 83.1 | 4.7e-26 | 114 | 201 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fYn+YA +vGFsvrks+s+ks++n ++ rtfvCs+eg+++++k+ +++++r tr+gC a+l +k + + k++vt+++ +HnH+lap GRMZM2G114461_P01 114 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKADHNHQLAP 201 6*********************6666.899*************9988..99*************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.7E-6 | 37 | 93 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.42E-10 | 40 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-11 | 43 | 82 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.86E-8 | 43 | 81 | No hit | No description |
Pfam | PF00320 | 1.2E-11 | 44 | 79 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF03101 | 2.1E-23 | 114 | 201 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.2E-25 | 324 | 418 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.878 | 592 | 639 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.9E-5 | 610 | 638 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.8E-6 | 614 | 641 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MMHMLVAPDR GGGELQPYVA PPAEQELELL RDNADDGLEG HVRCLRCGIS GNATPHMRRG 60 PDGPRTLCNA CGIAYRKGKM RRMIEAEPPI DEAALAKLVP EVGMEFVSEE KAYEFYNKYA 120 GHVGFSVRKS TSHKSSENIT KVRTFVCSRE GYNRDKKSLE AKKPRLDTRI GCPARLIIKV 180 TPECKYRVTD FKADHNHQLA PPSTMHMLRS QRILTELQPG EAELSDDSVV TPTTKATGDL 240 VVRQVSFLRS LSLLPADYKN YLRSKRMKAM QPGDGGAILK YLQTMQMDNP SFFYTMQIDE 300 DDKLTNFFWA DQKSRDDFNY FGDVLCLDTT YKINGYGRPL ALFLGVNHHK QTIIFGAAML 360 YDESFDSYKW LFDSFKIAMH GKQPAVALID QSIPLSSAMA AAWPSTTQRI CAWHVYQNSL 420 KHLNHVFQGS KTFAKDFGKC VFGYEDEDEF VFSWRSMLEK YDLRHNEWLS KVFAEKEQWA 480 LAYDRHIFCA DIISALQAES FSSILKKFLS PQLELLSFFK HYERAVDEHR YAELQADFQA 540 SQSYPRIPPA KMLKQTAHTY TPVVFEIFRK EFELFMDSVL FSCGEAGTTS EYKVASSEKP 600 KEHFVRFDSS DCSCLCTCRK FEFMGIPCCH MLKVLDYRNI KELPQKYLLK RWRRTAKSAN 660 EDNEGNATNA NNGSLLIVPA PPTNHHGLQS FSAMIQDASV SSMH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.83504 | 0.0 | embryo| leaf| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G114461 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G114461_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055818 | 0.0 | BT055818.1 Zea mays full-length cDNA clone ZM_BFb0212N15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146631.1 | 0.0 | FAR1 transcription factor | ||||
TrEMBL | B8A2M6 | 0.0 | B8A2M6_MAIZE; FAR1 transcription factor | ||||
STRING | GRMZM2G114461_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-118 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G114461_P01 |
Entrez Gene | 100280229 |