PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G114137_P01
Common NameCOL8, LOC100283174
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family CO-like
Protein Properties Length: 413aa    MW: 45368.2 Da    PI: 7.1482
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G114137_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.61.1e-071760339
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                       +r C+ + + +++++C  ++ +lC++C ++ H+        H+v
  GRMZM2G114137_P01 17 ARSCDGCMRRRARWHCPADDAFLCQTCDVSVHSAnplarrhHRV 60
                       678*****************************668888886655 PP
2CCT66.66.8e-23327370144
                CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                        Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  GRMZM2G114137_P01 327 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 370
                        9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.3E-91562IPR000315B-box-type zinc finger
PROSITE profilePS501199.7411562IPR000315B-box-type zinc finger
PfamPF006439.3E-61759IPR000315B-box-type zinc finger
CDDcd000213.25E-101862No hitNo description
PROSITE profilePS5101715.993327369IPR010402CCT domain
PfamPF062031.2E-17327369IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MTSAGAATGA ALGARTARSC DGCMRRRARW HCPADDAFLC QTCDVSVHSA NPLARRHHRV  60
RLPSASCSSP PRDPDAPTWL HGLKRRPRTP RSKPGGSKSN KHEATPSFIA AAASSAAVPD  120
LEAEESGSGI LGGNDDHHGF LQDDDEDLLY RVPVFDPMLA EFYNPVADEG EQKPACSLLM  180
PSLAETSPEF ASGGSAEADG LSVSFHVPDM ELASFAADME SLLMGVDDDG FDCLGFLDEE  240
KPQVNADLDA IVAPAPEPED KKRKRPEMIL KLNYEGVIAS WVRDGGSPWF HGERPHLDCH  300
ELWSDDFTTG SRELLGGAVT PVTGGEREAR VSRYREKRRT RLFAKKIRYE VRKLNAEKRP  360
RMKGRFVKRA TLPPLPRPPP PQQQQQQKQL PRAPPHVGMV LPPPPVSNGR LWF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288LKRRPRT
2337353RRTRLFAKKIRYEVRKL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G114137
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G114137_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278430.0KJ727843.1 Zea mays clone pUT5887 C2C2-CO-like transcription factor (COL8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149548.10.0uncharacterized protein LOC100283174
TrEMBLB6TFB20.0B6TFB2_MAIZE; C2C2-CO-like transcription factor
STRINGGRMZM2G114137_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100042228
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.14e-56B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]