PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G113742_P01
Common NameLOC100272614
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 267aa    MW: 29156.2 Da    PI: 10.0534
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G113742_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.9e-3347101155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kprlrWt +LH+rFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  GRMZM2G113742_P01  47 KPRLRWTADLHDRFVDAVAQLGGPDKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 101
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.15144104IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-3244102IPR009057Homeodomain-like
SuperFamilySSF466891.29E-1647102IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2447102IPR006447Myb domain, plants
PfamPF002492.8E-849100IPR001005SANT/Myb domain
PfamPF143792.5E-22142187IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0020126anatomytassel inflorescence
PO:0001007developmental stagepollen development stage
PO:0001180developmental stageplant proembryo stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MFPSLIHHAS HGRPDVAVAE DAPRSGCGLG LPGHGGGPSV VLTADPKPRL RWTADLHDRF  60
VDAVAQLGGP DKATPKAIMR TMGVKGLTLF HLKSHLQKYR LGRQSGKELT EQSKDASYLM  120
EAQSGTTLSP RGSTPDVKES QEVKEALRAQ MEVQRRLHEQ VEVQKHMQIR MEANQKYIDT  180
ILDKAFKIVS EQLSGFSISD QDLPILTSAR AMLSPADHLS SSVFPQLSVS SVSLHNPGPG  240
GGKGLPHVAD SHVFSQRPPE QFKRKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1847103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1847103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1847103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1847103157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.266500.0ear| embryo| endosperm| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G113742
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G113742_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390530.0BT039053.1 Zea mays full-length cDNA clone ZM_BFb0367F20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140549.10.0uncharacterized protein LOC100272614
SwissprotQ94A575e-70PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A317Y4C30.0A0A317Y4C3_MAIZE; Protein PHR1-LIKE 3
TrEMBLB4FPL50.0B4FPL5_MAIZE; Myb family transcription factor-related protein
TrEMBLK4JFL60.0K4JFL6_MAIZE; G2-like transcription factor (Fragment)
STRINGGRMZM2G113742_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34273873
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.15e-71G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]