PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G113078_P01 | ||||||||
Common Name | EREB117, ZEAMMB73_725008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | AP2 | ||||||||
Protein Properties | Length: 425aa MW: 46085.6 Da PI: 9.0787 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.6e-16 | 77 | 136 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g GRMZM2G113078_P01 77 SRFRGVSRHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 136 789******************888855666447*************************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 179 | 230 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g GRMZM2G113078_P01 179 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 230 89****************99966...3.6***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.24E-16 | 77 | 145 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-12 | 77 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-24 | 78 | 150 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.809 | 78 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-15 | 78 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-23 | 179 | 238 | No hit | No description |
SuperFamily | SSF54171 | 2.81E-17 | 179 | 239 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.9E-11 | 179 | 230 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-26 | 180 | 244 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 180 | 238 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-17 | 180 | 238 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MESSGMMLVK SEIESCYPGP SAAAPSVVIG GAPDGVEGGH RHQVVRRRRR EPPLLAPIGG 60 GGGIGKPLPS ITVKRSSRFR GVSRHRWTGR FEAHLWDKNS WNPTQRKKGK QVYLGAYDEE 120 EAAARAYDLA ALKYWGPTTY TNFPVMDYEK ELKVMENLTK EEYLASLRRK SSGFSRGVSK 180 YRGVARHHQN GRWEARIGRV FGNKYLYLGT YSTQEEAARA YDIAAIEYKG VNAVTNFDLR 240 SYITWLKPSA PPAAFNREAL VAQAAPAEQL QLHHHPAETA QMLPRGNPFL LDHMTSSGGG 300 QEASMSTVSP GGMRRRGSST ALSLLLKSSM FRQLVEKNSD AEEGAGDGEA AAAAGSGHPG 360 PGDAYEYHNF FQGEAPPDMC DLFSSGGGGG GGHARVAGFH RDIAACYDGE GLDGWSGFGN 420 MPSLQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 110 | PTQRKKGKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.138318 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G113078 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G113078_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023156675.1 | 0.0 | ethylene-responsive transcription factor WRI1 | ||||
TrEMBL | A0A1D6FWS4 | 0.0 | A0A1D6FWS4_MAIZE; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | GRMZM2G113078_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4162 | 34 | 73 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-78 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G113078_P01 |
Entrez Gene | 103635988 |
Publications ? help Back to Top | |||
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