PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G113060_P01
Common NameEREB71, LOC100274117, ZEAMMB73_901109
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 297aa    MW: 31697.7 Da    PI: 8.0128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G113060_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.6e-19113162255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  GRMZM2G113060_P01 113 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDGAAFRLRG 162
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.91E-33112172No hitNo description
Gene3DG3DSA:3.30.730.101.7E-32113171IPR001471AP2/ERF domain
SMARTSM003807.4E-38113176IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22113171IPR016177DNA-binding domain
PROSITE profilePS5103223.42113170IPR001471AP2/ERF domain
PRINTSPR003672.5E-11114125IPR001471AP2/ERF domain
PfamPF008479.2E-14114162IPR001471AP2/ERF domain
PRINTSPR003672.5E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAATTIDWHG RNAALYGVPD SKELVRALAP PMQQAPTISF AYPCPGVEQQ SQCAAAGSFL  60
GAGGLTPAQL LQVQSRLRFL RRPAAAGGAA QPMKRQGVPQ QAPLPARPAV SKLYRGVRQR  120
HWGKWVAEIR LPRNRTRLWL GTFDTAEEAA LAYDGAAFRL RGDSARLNFP ELRRGGQHLG  180
PPLHAAVDAK LHAICSGADV GAPLPQGQSQ SHATAAATTA TPSPFSSVSP HVKSEPGCSV  240
SESSFSADGD VSSTGSSDVV PEMQLLDFSE APWDESDSFH LRKYPSLEID WDSILIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-20109170163ATERF1
3gcc_A3e-20109170163ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G113060
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G113060_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0423890.0BT042389.1 Zea mays full-length cDNA clone ZM_BFb0216H21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141968.10.0uncharacterized protein LOC100274117
TrEMBLB4FZ510.0B4FZ51_MAIZE; AP2-EREBP transcription factor
STRINGGRMZM2G113060_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.17e-44related to AP2 4