PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G112764_P01
Common NameMYBR26, si606014a05
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 370aa    MW: 39317.6 Da    PI: 9.2662
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G112764_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.3e-1393137347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+++++ + ++lG+g+W+ I+r+    Rt+ q+ s+ qky
  GRMZM2G112764_P01  93 AWTEEEHKKFLLGLNKLGKGDWRGISRKYVVSRTPTQVASHAQKY 137
                        7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.3E-42241IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.6972338IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.59385142IPR017930Myb domain
SuperFamilySSF466896.65E-1687143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1789141IPR006447Myb domain, plants
SMARTSM007171.2E-1090140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-1092139IPR009057Homeodomain-like
CDDcd001672.49E-993138No hitNo description
PfamPF002493.0E-1193137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MMRDGVPPSV AGSGGAAGGD GPRRCSQCGH HGHNARTCTA RPVKLFGVRI GDKPIRKSAS  60
MGNIAHLAAE GSGGREEGYG SDGERPHKKR GEAWTEEEHK KFLLGLNKLG KGDWRGISRK  120
YVVSRTPTQV ASHAQKYFNR QTNVHRRKRR SSLFDMVIDD PSDQLPLSRS SSQEMEQQHL  180
DDPQPVAALP APVVSPATVV PPVPVEVSAS VPSPVQVPVP VSAPVMTSQP MEQDSDTTSS  240
IAGEAGTVMP GAMPPYLYPM MIPPPYYHTA FVPMPCYGYV PFYCEPQGAA QAPHEVVKPV  300
AVHSTPPLNA KDLYNMSELS LKGDSNANGG VPASPLPPKP IGRPERQSAF HGKGPTPTGG  360
SSGGLIPAVK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.62960.0ear| leaf| meristem| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G112764
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G112764_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0379840.0BT037984.1 Zea mays full-length cDNA clone ZM_BFb0205J21 mRNA, complete cds.
GenBankEU9700250.0EU970025.1 Zea mays clone 338730 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151255.10.0uncharacterized protein LOC100284888
TrEMBLA0A3L6GDN70.0A0A3L6GDN7_MAIZE; Transcription factor MYBS3
TrEMBLB4FLJ60.0B4FLJ6_MAIZE; DNA binding protein
STRINGGRMZM2G112764_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129002629
Representative plantOGRP1447944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-43MYB_related family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]