PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G112681_P01
Common NameZEAMMB73_477057, Zm.151790
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 494aa    MW: 54977.6 Da    PI: 7.4882
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G112681_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.62.1e-35952371128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                        lp+G++F+Ptd+el+ e+L++kv+++       +++  +i+++d    i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+     
  GRMZM2G112681_P01  95 LPAGVKFDPTDQELI-EHLEAKVKDEGsrshplIDE--FIPTIDgedgICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtdc 182
                        799************.99******999677544333..3444433445**********.555666799******************856666 PP

                NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GRMZM2G112681_P01 183 dvhKGETRWHKTGKTRPVMV-SGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 237
                        65434778************.9999**********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-3990256IPR003441NAC domain
PROSITE profilePS5100534.05495256IPR003441NAC domain
PfamPF023654.6E-1696237IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MTVYICLFGF ALQRSKQTGK QESSLPYILL LLLLNTHACA LPPGAAYEPD MNREHSSSSS  60
SKLINEKLEE HRISTAKHCP HCGEKIDSKP DWVGLPAGVK FDPTDQELIE HLEAKVKDEG  120
SRSHPLIDEF IPTIDGEDGI CYTHPEKLPG VTRDGLSKHF FHRPSKAYTT GTRKRRKIQT  180
DCDVHKGETR WHKTGKTRPV MVSGRQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGDL  240
EEEKEGELVV CKIFYQTQPR QSSWSAASDR GAATAMVAAT TAAAQEQHRR DSGSGSCSSR  300
DHEAVSATSF PAGYTVTTAV EMQQHMKQPA ADHFSFAPFR KTFDQEVGIG GDQVPSNQLG  360
RSETHHAGRG QQPHGPVLAT TAVPATAFLI SRPSNPVSTI VPPAMQHASV VLDNDQFHVP  420
AILLHHHDKF QPHQHQQEQT QQKLDRRSAS AGLEELIMGC TSSTNTKGET SIAHPQETEW  480
PYPYWPSDNQ DHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-129323713140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G112681
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G112681_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0884170.0BT088417.1 Zea mays full-length cDNA clone ZM_BFc0184A01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398102.10.0NAC domain-containing protein 75 isoform X3
SwissprotQ9M0F81e-145NAC75_ARATH; NAC domain-containing protein 75
TrEMBLC5XLY70.0C5XLY7_SORBI; Uncharacterized protein
STRINGGRMZM2G112681_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-111NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]