PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G112548_P01 | ||||||||
Common Name | LOC103625838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 336aa MW: 37285.1 Da PI: 8.4432 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.9 | 5.6e-51 | 28 | 155 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d+++ GRMZM2G112548_P01 28 LPGFRFHPTDEELVTFYLRRKVARKPLSM-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPI 118 69***************************.99***************445556889************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ge vglkk+Lv+y+g+a kg ktdW+mhe+rl GRMZM2G112548_P01 119 YPAaAGESVGLKKSLVYYRGSAGKGAKTDWMMHEFRL 155 *9878999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.84 | 27 | 179 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.44E-55 | 27 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-25 | 29 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MVAKVKRDGE VLVAAATGDS EEQDDLVLPG FRFHPTDEEL VTFYLRRKVA RKPLSMEIIK 60 EMDIYKHDPW DLPKASTVGG EKEWYFFCLR GRKYRNSIRP NRVTGSGFWK ATGIDRPIYP 120 AAAGESVGLK KSLVYYRGSA GKGAKTDWMM HEFRLPPAAS SPSTQEAVEV WTICRIFKRN 180 IAYKKRQPAG SNAPPPPLAE SSSNTGSFES GGGGDDGEYM NCLPVPVPAT AAVVPRQQHR 240 IGSMLNGGGV TASGSSFFRE VGVHGQQFQG HWLNRFAAPE IERKPQLLGS SAMTIAFHQN 300 DQTAATNECY KDGHWDEIAR FMEVNDPTVL YDCRYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 29 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 29 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 29 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 29 | 185 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-49 | 29 | 185 | 22 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-49 | 29 | 185 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 29 | 185 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G112548 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G112548_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055579 | 1e-156 | BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds. | |||
GenBank | HQ858689 | 1e-156 | HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644461.1 | 0.0 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 3e-81 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1D6GG92 | 0.0 | A0A1D6GG92_MAIZE; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3L6EGI7 | 0.0 | A0A3L6EGI7_MAIZE; Transcription factor JUNGBRUNNEN 1 | ||||
STRING | GRMZM2G112548_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-82 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G112548_P01 |
Entrez Gene | 103625838 |