PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G112548_P01
Common NameLOC103625838
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 336aa    MW: 37285.1 Da    PI: 8.4432
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G112548_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.95.6e-51281552128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d+++
  GRMZM2G112548_P01  28 LPGFRFHPTDEELVTFYLRRKVARKPLSM-EIIKEMDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPI 118
                        69***************************.99***************445556889************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + +  ge vglkk+Lv+y+g+a kg ktdW+mhe+rl
  GRMZM2G112548_P01 119 YPAaAGESVGLKKSLVYYRGSAGKGAKTDWMMHEFRL 155
                        *9878999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100555.8427179IPR003441NAC domain
SuperFamilySSF1019411.44E-5527179IPR003441NAC domain
PfamPF023657.5E-2529155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVAKVKRDGE VLVAAATGDS EEQDDLVLPG FRFHPTDEEL VTFYLRRKVA RKPLSMEIIK  60
EMDIYKHDPW DLPKASTVGG EKEWYFFCLR GRKYRNSIRP NRVTGSGFWK ATGIDRPIYP  120
AAAGESVGLK KSLVYYRGSA GKGAKTDWMM HEFRLPPAAS SPSTQEAVEV WTICRIFKRN  180
IAYKKRQPAG SNAPPPPLAE SSSNTGSFES GGGGDDGEYM NCLPVPVPAT AAVVPRQQHR  240
IGSMLNGGGV TASGSSFFRE VGVHGQQFQG HWLNRFAAPE IERKPQLLGS SAMTIAFHQN  300
DQTAATNECY KDGHWDEIAR FMEVNDPTVL YDCRYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-492918519171NO APICAL MERISTEM PROTEIN
1ut4_B1e-492918519171NO APICAL MERISTEM PROTEIN
1ut7_A1e-492918519171NO APICAL MERISTEM PROTEIN
1ut7_B1e-492918519171NO APICAL MERISTEM PROTEIN
3swm_A1e-492918522174NAC domain-containing protein 19
3swm_B1e-492918522174NAC domain-containing protein 19
3swm_C1e-492918522174NAC domain-containing protein 19
3swm_D1e-492918522174NAC domain-containing protein 19
3swp_A1e-492918522174NAC domain-containing protein 19
3swp_B1e-492918522174NAC domain-containing protein 19
3swp_C1e-492918522174NAC domain-containing protein 19
3swp_D1e-492918522174NAC domain-containing protein 19
4dul_A1e-492918519171NAC domain-containing protein 19
4dul_B1e-492918519171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G112548
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G112548_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0555791e-156BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds.
GenBankHQ8586891e-156HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644461.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK553e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1D6GG920.0A0A1D6GG92_MAIZE; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A3L6EGI70.0A0A3L6EGI7_MAIZE; Transcription factor JUNGBRUNNEN 1
STRINGGRMZM2G112548_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]