PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G112263_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 10224.7 Da PI: 11.2546 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.1 | 2.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEd+ll+++++++G g+W++ ++ g+ R++k+c++rw +yl GRMZM2G112263_P01 14 RGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 5 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.241 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.9E-18 | 15 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.22E-11 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 89 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDQLLANYIA EHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRADVKRGNI SKGGRRHHHQ APRHPRQQV |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.584 | 1e-144 | meristem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G112263 |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G112263_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728395 | 1e-144 | KJ728395.1 Zea mays clone pUT6679 MYB transcription factor (MYB3) mRNA, partial cds. | |||
GenBank | ZMU57002 | 1e-144 | U57002.1 Zea mays P protein (P) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020401761.1 | 2e-45 | myb-related protein P-like | ||||
Swissprot | P27898 | 2e-44 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A096PZZ6 | 3e-45 | A0A096PZZ6_MAIZE; MYB-related transcription factor (Fragment) | ||||
TrEMBL | A0A317Y7V1 | 3e-45 | A0A317Y7V1_MAIZE; Myb-related protein P | ||||
TrEMBL | Q8S431 | 3e-45 | Q8S431_MAIZE; A-type R2R3 Myb protein (Fragment) | ||||
STRING | GRMZM2G016020_P01 | 5e-46 | (Zea mays) | ||||
STRING | GRMZM2G057027_P02 | 9e-45 | (Zea mays) | ||||
STRING | GRMZM2G129872_P01 | 5e-46 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47460.1 | 4e-41 | myb domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G112263_P01 |