PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G111696_P02 | ||||||||
Common Name | Zm.19855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | VOZ | ||||||||
Protein Properties | Length: 564aa MW: 62410.6 Da PI: 5.925 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 218.7 | 1.5e-67 | 321 | 444 | 94 | 217 |
VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrl 185 elfdlsllege++rewlffd+prrafesgnrkqrslpdy grgwhesrk vmk+f+glkrsyymdpqpsss+ewhl+eyein +dalalyrl GRMZM2G111696_P02 321 ELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYGGRGWHESRKLVMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINASDALALYRL 412 9******************************************************************************************* PP VOZ 186 elklvdekks.akgkvskdsladlqkklgrlta 217 e+k++d kk ak+k++ ++l+++++++grlta GRMZM2G111696_P02 413 EYKSSDPKKGaAKSKLA-SPLNEIRQRMGRLTA 444 ******99962677775.79***********97 PP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MAGDPAAGVG GNAHPASGSK SSRSSTRHRQ FRDRAKVRVD DLQEMFCGLQ SARKESRSAD 60 AAVLEEQVHQ MLREWRAELS VPSPASSLQN SQGNNREASD PPSDTLRLLQ LAVPEEEDDA 120 SSKLLVPPSR QTHEHGQDSR MANTDQQCEA IDGGTAPAQH SLGQGVDGDC GEVSSVANAM 180 FNHRMYYTDY ELNIDDFLCG DGYKINISGS NEDQFNNLHG IGQLGHQQFD LPLDLPPTHS 240 YADANNSEQN TGDVFVHMSD LLTTIWPSPS QYLGPKCALW DCGRPAGGTE DSGDYCNPYH 300 AGLALNDDGL LGIRPVMRPR ELFDLSLLEG ESLREWLFFD TPRRAFESGN RKQRSLPDYG 360 GRGWHESRKL VMKDFAGLKR SYYMDPQPSS SHEWHLFEYE INASDALALY RLEYKSSDPK 420 KGAAKSKLAS PLNEIRQRMG RLTADSPVEN KRTARSKPKA NQNQKDTNAN TRPHVNTPNQ 480 VNAPNAYQTT QQVNQMAFLN GNVVYGPHLP HSESVVYGPH LPHSENVVYG PHLPHSENVV 540 YGPHLPQGYS AEGSSFFWNP SDGT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.19855 | 0.0 | aerial organ| ear| embryo| endosperm| leaf| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G111696 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G111696_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039629 | 0.0 | BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds. | |||
GenBank | HQ858765 | 0.0 | HQ858765.1 Zea mays clone UT1681 VOZ transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105277.2 | 0.0 | expressed protein DH12 | ||||
TrEMBL | B4FR91 | 0.0 | B4FR91_MAIZE; Transcription factor VOZ1 | ||||
STRING | GRMZM2G111696_P01 | 0.0 | (Zea mays) | ||||
STRING | GRMZM2G158717_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-103 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G111696_P02 |