PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111666_P01
Common NameLOC103651274, Zm.37089
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 422aa    MW: 42346.7 Da    PI: 6.5075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111666_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.44e-06300340954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  GRMZM2G111666_P01 300 ARLRRERVSERLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 340
                        599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.449291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-13297350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-10297345No hitNo description
SMARTSM003537.6E-12297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-10300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDATFGCWAG AGHHVDEYLS RQAAGCGRLD MVDEAFLGAC FGQLQCDGAL TTAAGGVDAG  60
ACQLVSSNAG AVQGGAGMDG DPLAFLSAGT GDVFDAGLLD AALAFTRELG VGVVGDGGAA  120
SNGALLSSYD SGTTGGNISS GESNNYSGGG GGHDAEVVSP TTAPPPPLTF THHASSNSQA  180
QQAAHHAKRK VTDEYPATTT TTTAAPPPAF PLPGGGGGAK RRAATSISFG GGHVPSCGAA  240
AAGYEPDMEA MAQVKEMIYR AAAMRPVNLG PEAVGAAGAG AERPRRKNVR ISSDPQTVAA  300
RLRRERVSER LRVLQKLVPG GSKMDTASML DEAASYLKFL KSQVQALETL GTTTATNANS  360
SASATTSRSS AASRSPQYNY YGGGGNNNNP AGFLGFSNVI SPAGYVNPGG SSSNTGSNKL  420
LF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286RPRRK
2300305RLRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111666
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111666_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854970.0BT085497.2 Zea mays full-length cDNA clone ZM_BFc0022I20 mRNA, complete cds.
GenBankBT0857060.0BT085706.2 Zea mays full-length cDNA clone ZM_BFc0049P14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675120.10.0transcription factor SPATULA
RefseqXP_008675121.10.0transcription factor SPATULA
SwissprotA0A0P0WQ906e-52LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A096RT680.0A0A096RT68_MAIZE; Transcription factor bHLH87
STRINGGRMZM2G111666_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-27bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]