PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G111354_P01 | ||||||||
Common Name | LOC103636675, WRKY22, ZEAMMB73_016401 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 227aa MW: 25163.2 Da PI: 8.3286 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.5 | 5.8e-33 | 148 | 206 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+se+prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ GRMZM2G111354_P01 148 LDDGYRWRKYGQKAVKNSEHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 206 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 134 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 142 | 207 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.564 | 143 | 208 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.2E-39 | 148 | 207 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-26 | 149 | 206 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MENQQQLQGD DESPSHTFPS FPYFTVPSPQ PSLLPPPSES DDQRNTLATA LQQQPSSACN 60 NNDLQLLPLQ LGAATVDWSA LLQQHASLMG PLLPGLLLQQ PPAPLDDQSA ENAGSSSSKE 120 KGGAAAGRKK KASRPRFAFQ TRSVNDILDD GYRWRKYGQK AVKNSEHPRS YYRCTHHTCN 180 VKKQVQRLAK DTSIVVTTYE GVHNHPCEKL MEALSPILKQ LQFLSQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-24 | 138 | 205 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-24 | 138 | 205 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G111354 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G111354_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728244 | 0.0 | KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657250.1 | 1e-168 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A3L6DSY3 | 1e-167 | A0A3L6DSY3_MAIZE; Putative WRKY transcription factor 24 | ||||
TrEMBL | K7VQ78 | 1e-167 | K7VQ78_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G111354_P01 | 1e-168 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 2e-55 | WRKY DNA-binding protein 24 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G111354_P01 |
Entrez Gene | 103636675 |