PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111306_P01
Common NameLOC103635903, ZEAMMB73_695711, Zm.10345
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 241aa    MW: 27523.6 Da    PI: 8.6489
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111306_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12100143447
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        WTt+E+  ++++ + +G g Wk I++++  +Rt+ q+ s+ qky
  GRMZM2G111306_P01 100 WTTDEHRNFLRGLEVFGRGKWKNISKYFVPTRTPVQISSHAQKY 143
                        *****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2892148IPR017930Myb domain
SMARTSM007175.3E-996146IPR001005SANT/Myb domain
SuperFamilySSF466891.01E-1598148IPR009057Homeodomain-like
PfamPF002491.2E-9100143IPR001005SANT/Myb domain
CDDcd001674.37E-10100144No hitNo description
Gene3DG3DSA:1.10.10.601.2E-10100145IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-13100147IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MNPNFNSVWS APEINMMNSL ITSHIANNTY TNNQHVVASR SAIVNHNNFG MPTEVVPPVD  60
NMDMMQGYLM DDTDAMRLVQ GQQHMPNVVP NQRRHAVKFW TTDEHRNFLR GLEVFGRGKW  120
KNISKYFVPT RTPVQISSHA QKYFRRQECT TEKQRFSIND VGLYDTQPWV RQNNSSSSWE  180
ALTFTAGRAY NNTNYCAFNS LPYASSQASN NQVATWITDQ QATASSSIAP PATEESQIYN  240
R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.103450.0pedicel| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111306
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111306_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3185180.0AJ318518.1 Zea mays mRNA for one repeat myb transcriptional factor (gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008656502.10.0myb-like protein J
TrEMBLK7V5I70.0K7V5I7_MAIZE; Myb protein1
STRINGGRMZM2G111306_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.11e-19MYB family protein