PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111204_P01
Common NameHB131, LOC100279552
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HB-other
Protein Properties Length: 380aa    MW: 41862.9 Da    PI: 7.0265
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111204_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-0731752256
                       SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
           Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                       n  p+++  + LA+k            ++ +qV +WFqNrR+ ++
  GRMZM2G111204_P01 31 NGIPTRAVLQTLADKFsasperagkvAIQPKQVWNWFQNRRYSHR 75
                       66788888888888888888888888****************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0035781IPR001356Homeobox domain
CDDcd000861.30E-41375No hitNo description
SuperFamilySSF466894.28E-91376IPR009057Homeodomain-like
PROSITE profilePS500719.6691377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-61480IPR009057Homeodomain-like
PfamPF000466.2E-53175IPR001356Homeobox domain
PfamPF167196.3E-42134260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRPPSAGAP AFRFLPSEVA EMEARLLQLN NGIPTRAVLQ TLADKFSASP ERAGKVAIQP  60
KQVWNWFQNR RYSHRAKTPR AASSPPAKMT PSGADHHQHA ANASAFRAAQ LSSVAAAHHG  120
SSSTGKNPVE SVSVEFEAKS ARDGAWYDVA AFLSHRLFES GDPEVRVRFS GFGAEEDEWI  180
NVRKCVRQRS LPCEATECVA VLPGDLILCF QEGKDQALYY DAHVLDAQRR RHDVRGCRCR  240
FLVRYDHDSS EEIVPLRKVC RRPETDYRLQ ILHAARAAAT NADVHTPPKE VKVELASTDK  300
SPAEQKPHKQ HKMMDVNTDE VTMVSTLEQD ETPGKTVAPV PSATAETRNS SSDTVMKGAE  360
ASSVVEDDDE VQAVDKMKEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-491312641134SHH1 SAWADEE
4iur_B5e-491312641134SHH1 SAWADEE
4iut_A5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-491312641134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.948780.0cell culture| ear| meristem| ovary| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111204
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111204_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0544410.0BT054441.1 Zea mays full-length cDNA clone ZM_BFc0060H17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146021.10.0uncharacterized protein LOC100279552
SwissprotQ8RWJ71e-126SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLB7ZYP90.0B7ZYP9_MAIZE; HB transcription factor
STRINGGRMZM2G111204_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-112sequence-specific DNA binding transcription factors;sequence-specific DNA binding