PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G111204_P01 | ||||||||
Common Name | HB131, LOC100279552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | HB-other | ||||||||
Protein Properties | Length: 380aa MW: 41862.9 Da PI: 7.0265 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.8 | 1.5e-07 | 31 | 75 | 22 | 56 |
SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 n p+++ + LA+k ++ +qV +WFqNrR+ ++ GRMZM2G111204_P01 31 NGIPTRAVLQTLADKFsasperagkvAIQPKQVWNWFQNRRYSHR 75 66788888888888888888888888****************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0035 | 7 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.30E-4 | 13 | 75 | No hit | No description |
SuperFamily | SSF46689 | 4.28E-9 | 13 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.669 | 13 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-6 | 14 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.2E-5 | 31 | 75 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 6.3E-42 | 134 | 260 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MGRPPSAGAP AFRFLPSEVA EMEARLLQLN NGIPTRAVLQ TLADKFSASP ERAGKVAIQP 60 KQVWNWFQNR RYSHRAKTPR AASSPPAKMT PSGADHHQHA ANASAFRAAQ LSSVAAAHHG 120 SSSTGKNPVE SVSVEFEAKS ARDGAWYDVA AFLSHRLFES GDPEVRVRFS GFGAEEDEWI 180 NVRKCVRQRS LPCEATECVA VLPGDLILCF QEGKDQALYY DAHVLDAQRR RHDVRGCRCR 240 FLVRYDHDSS EEIVPLRKVC RRPETDYRLQ ILHAARAAAT NADVHTPPKE VKVELASTDK 300 SPAEQKPHKQ HKMMDVNTDE VTMVSTLEQD ETPGKTVAPV PSATAETRNS SSDTVMKGAE 360 ASSVVEDDDE VQAVDKMKEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 5e-49 | 131 | 264 | 1 | 134 | SHH1 SAWADEE |
4iur_B | 5e-49 | 131 | 264 | 1 | 134 | SHH1 SAWADEE |
4iut_A | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 5e-49 | 131 | 264 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94878 | 0.0 | cell culture| ear| meristem| ovary| pericarp| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G111204 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G111204_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054441 | 0.0 | BT054441.1 Zea mays full-length cDNA clone ZM_BFc0060H17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146021.1 | 0.0 | uncharacterized protein LOC100279552 | ||||
Swissprot | Q8RWJ7 | 1e-126 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | B7ZYP9 | 0.0 | B7ZYP9_MAIZE; HB transcription factor | ||||
STRING | GRMZM2G111204_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4190 | 29 | 48 | Representative plant | OGRP1641 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-112 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G111204_P01 |
Entrez Gene | 100279552 |