PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111146_P04
Common NameZm.96901
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 358aa    MW: 38752.1 Da    PI: 8.4906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111146_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-1488139155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+++P+a   + ++ + a+i+  A+e++k+L+
  GRMZM2G111146_P04  88 QRMTHIAVERNRRRQMNEYLAALRSIMPEA---YVQRGDQASIVGGAIEFVKELE 139
                        79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.59E-1486143No hitNo description
SuperFamilySSF474592.09E-1786157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.15487138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-1288139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1488152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSALVDALCA PPSDTALVYD TFNAANFLFD AAAFCDGAGI VAAPASAHQA PVEAQAATTS  60
AAPTTTARAR KRRRRPRSCK SREETETQRM THIAVERNRR RQMNEYLAAL RSIMPEAYVQ  120
RGDQASIVGG AIEFVKELEQ QVQCLEAQKR KLLVHQRVAA AKPADATPMR ASSSGARACC  180
ADSAAAAATT SNCSSGLTTE DAAADHALPP PPFAQFFTYP QYVWCHSAAR DPAEEEDGRR  240
SGVADVEVTL VETHASVRVM TARRPGQLLS LVTGLQALRL AVLHLSVVTA LDALVLYTTS  300
VKVHNCTKKV SFDSFLRFFF VVDGVGQGFC IEHKPMHKHK FPPYKLQGSC TTNQAILF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973RKRRR
26976RKRRRRPR
38899RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.969010.0cell lignification| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111146
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111146_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350320.0BT035032.1 Zea mays full-length cDNA clone ZM_BFb0033F17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020408731.10.0putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBLB4FD440.0B4FD44_MAIZE; Uncharacterized protein
STRINGGRMZM2G111146_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-36beta HLH protein 71