PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111146_P01
Common NamebHLH53, Zm.96901
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 344aa    MW: 36531.3 Da    PI: 6.4156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111146_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-1488139155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+++P+a   + ++ + a+i+  A+e++k+L+
  GRMZM2G111146_P01  88 QRMTHIAVERNRRRQMNEYLAALRSIMPEA---YVQRGDQASIVGGAIEFVKELE 139
                        79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1786157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-1486143No hitNo description
PROSITE profilePS5088815.15487138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1488152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-1288139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0001180developmental stageplant proembryo stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSALVDALCA PPSDTALVYD TFNAANFLFD AAAFCDGAGI VAAPASAHQA PVEAQAATTS  60
AAPTTTARAR KRRRRPRSCK SREETETQRM THIAVERNRR RQMNEYLAAL RSIMPEAYVQ  120
RGDQASIVGG AIEFVKELEQ QVQCLEAQKR KLLVHQRVAA AKPADATPMR ASSSGARACC  180
ADSAAAAATT SNCSSGLTTE DAAADHALPP PPFAQFFTYP QYVWCHSAAR DPAEEEDGRR  240
SGVADVEVTL VETHASVRVM TARRPGQLLS LVTGLQALRL AVLHLSVVTA LDALVLYTTS  300
VKVEEGCGLA TADDIAAAVH HVLCIIDAEA TEQQLLAAAG PQPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16973RKRRR
26976RKRRRRPR
38899RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.969010.0cell lignification| ear| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111146
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111146_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386550.0BT038655.1 Zea mays full-length cDNA clone ZM_BFb0304G04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140356.10.0uncharacterized protein LOC100272406
TrEMBLA0A3L6EIT80.0A0A3L6EIT8_MAIZE; Transcription factor bHLH71
TrEMBLB4FNG70.0B4FNG7_MAIZE; BHLH transcription factor
STRINGGRMZM2G111146_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.15e-50beta HLH protein 71