PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G111136_P02 | ||||||||
Common Name | sbp1, SBP10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | SBP | ||||||||
Protein Properties | Length: 441aa MW: 46072.7 Da PI: 7.1695 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 127.8 | 4e-40 | 210 | 286 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+egC+adls ak+yhrrhkvCe h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++ GRMZM2G111136_P02 210 RCQAEGCKADLSAAKHYHRRHKVCEYHAKASAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPS 286 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.5E-34 | 203 | 272 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.163 | 208 | 285 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-37 | 209 | 287 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-30 | 211 | 284 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MMMNTNAMSP TASTDADFSF GPLQPYVGFD VAGMGMPSVV VERSSSLLQH NTSSSSHNNN 60 LGLYDSFDFA AAAGLPFQES GLLPPASLPL APSPQSMAAM AMPPSSLLLT LPGVPAAADV 120 VYNPFGGGGA GGFLKREDGG PLVDAAGGGG RIGLNLGRRT YFSPADVLAV DRLLTRSRLA 180 GGGVGVGLGM GLGMGVLGLG AAHHQQPPPR CQAEGCKADL SAAKHYHRRH KVCEYHAKAS 240 AVAAAGKQQR FCQQCSRFHV LAEFDEAKRS CRKRLTEHNR RRRKPSSAQD EDSSPPPPKK 300 LDTCITNTAS YNDDLKTGAS NTAAAAISPN GSGVSCLDVM DNGQTSSAAA PTALSLAAPP 360 PPPLHEKDGS LDSMLMQRVL QGRREDDDDE QRRHFITSLV MQTTQQQHSG GGGAGNILSC 420 SSVSDQHNGG GCNGFFEVDF I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-29 | 211 | 284 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 267 | 284 | KRSCRKRLTEHNRRRRKP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G111136 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G111136_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966891 | 0.0 | EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106077.2 | 0.0 | SBP-domain protein 1 | ||||
Swissprot | Q0E3F8 | 1e-71 | SPL5_ORYSJ; Squamosa promoter-binding-like protein 5 | ||||
TrEMBL | B6TPH6 | 0.0 | B6TPH6_MAIZE; SBP transcription factor | ||||
STRING | GRMZM2G111136_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2375 | 35 | 93 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-36 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G111136_P02 |
Publications ? help Back to Top | |||
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