PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111136_P02
Common Namesbp1, SBP10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 441aa    MW: 46072.7 Da    PI: 7.1695
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111136_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.84e-40210286177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+adls ak+yhrrhkvCe h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  GRMZM2G111136_P02 210 RCQAEGCKADLSAAKHYHRRHKVCEYHAKASAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPS 286
                        6**************************************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-34203272IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.163208285IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37209287IPR004333Transcription factor, SBP-box
PfamPF031101.8E-30211284IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMMNTNAMSP TASTDADFSF GPLQPYVGFD VAGMGMPSVV VERSSSLLQH NTSSSSHNNN  60
LGLYDSFDFA AAAGLPFQES GLLPPASLPL APSPQSMAAM AMPPSSLLLT LPGVPAAADV  120
VYNPFGGGGA GGFLKREDGG PLVDAAGGGG RIGLNLGRRT YFSPADVLAV DRLLTRSRLA  180
GGGVGVGLGM GLGMGVLGLG AAHHQQPPPR CQAEGCKADL SAAKHYHRRH KVCEYHAKAS  240
AVAAAGKQQR FCQQCSRFHV LAEFDEAKRS CRKRLTEHNR RRRKPSSAQD EDSSPPPPKK  300
LDTCITNTAS YNDDLKTGAS NTAAAAISPN GSGVSCLDVM DNGQTSSAAA PTALSLAAPP  360
PPPLHEKDGS LDSMLMQRVL QGRREDDDDE QRRHFITSLV MQTTQQQHSG GGGAGNILSC  420
SSVSDQHNGG GCNGFFEVDF I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-292112841184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267284KRSCRKRLTEHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111136
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111136_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668910.0EU966891.1 Zea mays clone 297975 SBP-domain protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106077.20.0SBP-domain protein 1
SwissprotQ0E3F81e-71SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLB6TPH60.0B6TPH6_MAIZE; SBP transcription factor
STRINGGRMZM2G111136_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-36squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]