PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G111136_P01
Common Namesbp1
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 440aa    MW: 46001.6 Da    PI: 7.1695
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G111136_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.94e-40210286177
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                        +Cq+egC+adls ak+yhrrhkvCe h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk++
  GRMZM2G111136_P01 210 RCQAEGCKADLSAAKHYHRRHKVCEYHAKASAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPS 286
                        6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.5E-34203272IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.163208285IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-37209287IPR004333Transcription factor, SBP-box
PfamPF031101.8E-30211284IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MMMNTNAMSP TASTDADFSF GPLQPYVGFD VAGMGMPSVV VERSSSLLQH NTSSSSHNNN  60
LGLYDSFDFA AAAGLPFQES GLLPPASLPL APSPQSMAAM AMPPSSLLLT LPGVPAAADV  120
VYNPFGGGGA GGFLKREDGG PLVDAAGGGG RIGLNLGRRT YFSPADVLAV DRLLTRSRLA  180
GGGVGVGLGM GLGMGVLGLG AAHHQQPPPR CQAEGCKADL SAAKHYHRRH KVCEYHAKAS  240
AVAAAGKQQR FCQQCSRFHV LAEFDEAKRS CRKRLTEHNR RRRKPSSAQD EDSSPPPPKK  300
LDTCITNTAS YNDDLKSASN TAAAAISPNG SGVSCLDVMD NGQTSSAAAP TALSLAAPPP  360
PPLHEKDGSL DSMLMQRVLQ GRREDDDDEQ RRHFITSLVM QTTQQQHSGG GGAGNILSCS  420
SVSDQHNGGG CNGFFEVDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-292112841184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267284KRSCRKRLTEHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G111136
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G111136_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116140.0AJ011614.1 Zea mays mRNA for SBP-domain protein 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001106077.20.0SBP-domain protein 1
SwissprotQ0E3F81e-71SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLQ9SM190.0Q9SM19_MAIZE; SBP-domain protein 1
STRINGGRMZM2G111136_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-36squamosa promoter binding protein-like 8