PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G111123_P01 | ||||||||
Common Name | LOC100273773 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28846.8 Da PI: 6.5219 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6.1e-16 | 155 | 245 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f + +t s+v+ +l lpk+f++eh k ++ t+tl de+ +s +++l + l++GWkeF+ +++L +gD +vF+l++r++f GRMZM2G111123_P01 155 FTQPMTLSHVSGGFWLGLPKHFCREHLPK--SDETITLVDEEDdESDTFYL--A---MQAGLSTGWKEFAIQHKLLDGDCLVFQLIERTKF- 238 67788999******************533..55699999*65526666777..2...33349************************98888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v ++r+ GRMZM2G111123_P01 239 -KVYIIRA 245 .9998886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.24E-22 | 148 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-19 | 150 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.00E-24 | 153 | 244 | No hit | No description |
PROSITE profile | PS50863 | 11.434 | 155 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-18 | 155 | 246 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 155 | 245 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAEAVAVAYE EQRRRQIEMN KRKLEELQLH HLSAAVREAA AAAKPSSAKK RKAPVPRDAA 60 TEPPRRSDRL ANLPEKPMYR EVRVNLPFPE GSKSNARVPL DAANSVVVEP LRWSDRLANL 120 PKKPMYHEDS DEERSYAISK AEELVQELGS SFPIFTQPMT LSHVSGGFWL GLPKHFCREH 180 LPKSDETITL VDEEDDESDT FYLAMQAGLS TGWKEFAIQH KLLDGDCLVF QLIERTKFKV 240 YIIRATLYFE SDH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85228 | 0.0 | meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G111123 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G111123_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041782 | 0.0 | BT041782.1 Zea mays full-length cDNA clone ZM_BFb0054E02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141649.1 | 0.0 | B3 domain-containing protein | ||||
Refseq | XP_008672457.1 | 0.0 | B3 domain-containing protein isoform X1 | ||||
Refseq | XP_008672458.1 | 0.0 | B3 domain-containing protein isoform X1 | ||||
Swissprot | Q69V36 | 7e-82 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | B4FXE4 | 0.0 | B4FXE4_MAIZE; B3 domain-containing protein | ||||
TrEMBL | K0D9P9 | 0.0 | K0D9P9_MAIZE; ABI48 ABI3VP1 type transcription factor (Fragment) | ||||
STRING | GRMZM2G111123_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 | Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 4e-45 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G111123_P01 |
Entrez Gene | 100273773 |
Publications ? help Back to Top | |||
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