PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G110579_P01
Common NameGRAS10, si486015c12
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 595aa    MW: 62880.7 Da    PI: 5.9948
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G110579_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.66.4e-742385943374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L ++A+a ++g+   a+a+Larl+++  p g+p+ R a+y++eAL a   +      +   +  +s+ +++ +laa+k+fs+ sP+l+f+
  GRMZM2G110579_P01 238 DELAAAAKAAEAGNSIGARAILARLNHQLPPLGKPFLRSASYLKEALLALAEG------HHGGCHLKSPLDVALKLAAYKTFSDHSPVLQFT 323
                        7899*********************************************9999......6667777777889******************** PP

               GRAS  95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        ++ta qa+l+++ g+  +++H+iDfd++ G+QW+++lq+La +R    +  p +++T+++s++s++  el   ++++a+fA  lg+pfef++
  GRMZM2G110579_P01 324 NFTATQALLDEIGGStsSCIHVIDFDLGVGGQWASFLQELAhCRGaggAALPFVKLTAFVSAASHHPLELCLARDNIAQFAVDLGIPFEFSA 415
                        *************998899**********************76776544589**************************************** PP

               GRAS 181 lvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                        +   + +++++ e+   + +E ++V l            +     +++L lvk+l Pk+v+ +++ ad+ + +F + fl++++ ++ l+dsl
  GRMZM2G110579_P01 416 I---SADMINPAEFISATdDEDVVVVLPTGCSARA---PP----LPAILGLVKQLAPKIVIAIDHGADRADLPFSQYFLNCFQSCMFLLDSL 497
                        8...7788888887544449999999988666655...44....556********************************************* PP

               GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                        +a  + +++ + k+E++l++++i++ v  +g+       +   Wr+++ +a F pvp s+ a+++a++ll++v+++g++ve+    l+l+W+
  GRMZM2G110579_P01 498 DAA-GIDADSACKIEKFLIQPRIEDSVLGRGKV-----DNPIAWRSAFAAARFVPVPPSNWAEAEADCLLKRVQVHGFHVEKCGVGLTLYWQ 583
                        888.7899*********************9997.....77889************************************************* PP

               GRAS 364 drpLvsvSaWr 374
                        + +Lv+vSaWr
  GRMZM2G110579_P01 584 HGELVTVSAWR 594
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.706210574IPR005202Transcription factor GRAS
PfamPF035142.2E-71238594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MGVVVADSWD AMLGNAAAAA QDQTFLNWFI GAAGDLDQSG PPLPVHHQPL LDNVGFGFPA  60
ADPLGFTLDP HLGGVASDMS SPGAVSQTTN SGGGGNKASS AFGLLSPESA SFQPPPLPVL  120
FHEGIDTKPP LDTQSPGLLH QYQHQPTPAT TFLMSIPSFP SYNQQSPLVH PPAKRHQSIG  180
GDLYLARTRL LPPPPTGQGH AFPPLNGPAP FQLQPSPPLP HGAMKRTAAE AAQQQLLDEL  240
AAAAKAAEAG NSIGARAILA RLNHQLPPLG KPFLRSASYL KEALLALAEG HHGGCHLKSP  300
LDVALKLAAY KTFSDHSPVL QFTNFTATQA LLDEIGGSTS SCIHVIDFDL GVGGQWASFL  360
QELAHCRGAG GAALPFVKLT AFVSAASHHP LELCLARDNI AQFAVDLGIP FEFSAISADM  420
INPAEFISAT DDEDVVVVLP TGCSARAPPL PAILGLVKQL APKIVIAIDH GADRADLPFS  480
QYFLNCFQSC MFLLDSLDAA GIDADSACKI EKFLIQPRIE DSVLGRGKVD NPIAWRSAFA  540
AARFVPVPPS NWAEAEADCL LKRVQVHGFH VEKCGVGLTL YWQHGELVTV SAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1931059480375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.346750.0ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G110579
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G110579_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0542130.0BT054213.1 Zea mays full-length cDNA clone ZM_BFb0171M14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020394223.10.0scarecrow-like protein 27 isoform X1
TrEMBLA0A1D6HFA60.0A0A1D6HFA6_MAIZE; Scarecrow-like protein 6
STRINGGRMZM2G110579_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-78GRAS family protein