PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G110541_P01 | ||||||||
Common Name | Zm.143689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | DBB | ||||||||
Protein Properties | Length: 142aa MW: 15378.8 Da PI: 9.4526 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.2 | 1e-05 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ + + ++ fC + lCe C H+ H++ + GRMZM2G110541_P01 4 QCDVCAAEAASVFCCAVEAALCEACDRRVHRAnklagkHRRLS 46 7*****************************7688888888765 PP | |||||||
2 | zf-B_box | 29.8 | 1.2e-09 | 63 | 104 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++ C+ ++ek+ lfC++++ lC+dC + H Ht GRMZM2G110541_P01 63 PPLCDICQEKRGLLFCKEDRAILCPDCDVPVHTAselamrHT 104 689**************************9995566666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.712 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-6 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.08E-4 | 3 | 47 | No hit | No description |
SMART | SM00336 | 9.9E-12 | 61 | 108 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.172 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.0E-8 | 62 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.96E-7 | 64 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MKVQCDVCAA EAASVFCCAV EAALCEACDR RVHRANKLAG KHRRLSLLSP AAPSSSAQQT 60 PPPPLCDICQ EKRGLLFCKE DRAILCPDCD VPVHTASELA MRHTRFLLTG VRLSGSPQSP 120 PRARRRRRRT RTTAAAAASP ST |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 130 | RRRRRRTR |
2 | 124 | 129 | RRRRRT |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G110541 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G110541_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728397 | 0.0 | KJ728397.1 Zea mays clone pUT6681 orphans transcription factor (Orphan134) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002454563.1 | 2e-62 | B-box zinc finger protein 20 | ||||
Swissprot | Q0IGM7 | 2e-48 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | A0A060D895 | 4e-94 | A0A060D895_MAIZE; B-box zinc finger protein 20 (Fragment) | ||||
TrEMBL | A0A3L6EQ60 | 4e-94 | A0A3L6EQ60_MAIZE; B-box zinc finger protein 21 | ||||
STRING | GRMZM2G110541_P01 | 5e-96 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 | Representative plant | OGRP2984 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 1e-28 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G110541_P01 |
Publications ? help Back to Top | |||
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